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Aliases for LOC105378672 Gene

Subcategory (RNA class) for LOC105378672 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378672 Gene

  • Uncharacterized LOC105378672 3
  • AL603839.3 5

External Ids for LOC105378672 Gene

Previous GeneCards Identifiers for LOC105378672 Gene

  • GC01U904335

Summaries for LOC105378672 Gene

GeneCards Summary for LOC105378672 Gene

LOC105378672 (Uncharacterized LOC105378672) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378672 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378672 Gene

Genomics for LOC105378672 Gene

Regulatory Elements for LOC105378672 Gene

Enhancers for LOC105378672 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H040256 1.2 ENCODE 29.6 +251.0 250963 2 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 ZC3H11A ZFP41 PPIE PPIEL EXO5 TRIT1 ENSG00000259943 RLF NFYC-AS1 LOC105378672 ENSG00000182109 COL9A2
GH01H040508 1.1 ENCODE 27 -0.3 -262 1 HDGF ARID4B SIN3A DMAP1 BRCA1 ZNF2 YY1 ZNF121 SLC30A9 ZNF207 LOC105378672 PPIEL ZFP69 ENSG00000259943 NFYC-AS1 PPIE EXO5 ENSG00000227278
GH01H040530 1.1 ENCODE 26.2 -23.5 -23454 2 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 LOC105378672 EXO5 PPIE ZFP69 PABPC4 SCMH1 RLF TRIT1 ZNF684 GC01M040555
GH01H040539 1 FANTOM5 Ensembl 26.8 -30.9 -30888 0 FOXA2 MAX REST GABPA YY1 JUND ATF3 ZBTB33 HNF4A LOC105378672 EXO5 RLF ZNF684 GC01M040555
GH01H040534 0.9 ENCODE 26.8 -27.0 -26971 1 FOXA2 MLX ARID4B ZSCAN9 RARA ZNF121 CREM MIXL1 THAP11 PPARG LOC105378672 ZFP69 ZNF684 GC01M040555
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105378672 on UCSC Golden Path with GeneCards custom track

Promoters for LOC105378672 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000005219 -30 1400 HDGF MLX ARID4B SIN3A DMAP1 BRCA1 ZNF2 YY1 ZNF121 SLC30A9

Genomic Location for LOC105378672 Gene

Chromosome:
1
Start:
40,487,269 bp from pter
End:
40,508,671 bp from pter
Size:
21,403 bases
Orientation:
Minus strand

Genomic View for LOC105378672 Gene

Genes around LOC105378672 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378672 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378672 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378672 Gene

Proteins for LOC105378672 Gene

Post-translational modifications for LOC105378672 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378672 Gene

Domains & Families for LOC105378672 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378672 Gene

Function for LOC105378672 Gene

Phenotypes From GWAS Catalog for LOC105378672 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378672 Gene

Localization for LOC105378672 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378672 Gene

Pathways & Interactions for LOC105378672 Gene

SuperPathways for LOC105378672 Gene

No Data Available

Interacting Proteins for LOC105378672 Gene

Gene Ontology (GO) - Biological Process for LOC105378672 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378672 Gene

Drugs & Compounds for LOC105378672 Gene

No Compound Related Data Available

Transcripts for LOC105378672 Gene

mRNA/cDNA for LOC105378672 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378672 Gene

No ASD Table

Relevant External Links for LOC105378672 Gene

GeneLoc Exon Structure for
LOC105378672

Expression for LOC105378672 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378672 Gene

Orthologs for LOC105378672 Gene

Evolution for LOC105378672 Gene

ENSEMBL:
Gene Tree for LOC105378672 (if available)
TreeFam:
Gene Tree for LOC105378672 (if available)

No data available for Orthologs for LOC105378672 Gene

Paralogs for LOC105378672 Gene

No data available for Paralogs for LOC105378672 Gene

Variants for LOC105378672 Gene

Sequence variations from dbSNP and Humsavar for LOC105378672 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000119744 -- 40,490,971(+) TTGAA(A/G)CTCCA intron-variant
rs1000158405 -- 40,497,060(+) TAAAA(A/G)TAACA intron-variant
rs1000272520 -- 40,498,109(+) GCTTG(C/T)GCGAT intron-variant
rs1000365921 -- 40,508,699(+) GCGAG(C/G)GCCTC upstream-variant-2KB
rs1000714705 -- 40,507,464(+) ATGAG(A/C)CACCA intron-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105378672 Gene

Disorders for LOC105378672 Gene

No disorders were found for LOC105378672 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378672 Gene

Publications for LOC105378672 Gene

No publications were found for LOC105378672 Gene.

Products for LOC105378672 Gene

Sources for LOC105378672 Gene

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