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Aliases for LOC105378668 Gene

Subcategory (RNA class) for LOC105378668 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378668 Gene

  • Uncharacterized LOC105378668 3
  • RP1-118J21.5 5

External Ids for LOC105378668 Gene

Previous GeneCards Identifiers for LOC105378668 Gene

  • GC01U904797

Summaries for LOC105378668 Gene

GeneCards Summary for LOC105378668 Gene

LOC105378668 (Uncharacterized LOC105378668) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378668 Gene

Genomics for LOC105378668 Gene

Regulatory Elements for LOC105378668 Gene

Enhancers for LOC105378668 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G039931 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +37.0 37031 6.3 HDGF ATF1 FOXA2 PKNOX1 ARNT MLX CREB3L1 ARID4B YY1 TCF12 CAP1 MYCL TRIT1 PPT1 LOC105378668 ENSG00000202222 BMP8B RLF ZMPSTE24 SMAP2
GH01G039959 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +62.8 62848 1.6 HDGF CTCF MXI1 MAX ZIC2 YY1 ZNF121 POLR2A NFYB EED MYCL CAP1 TRIT1 ENSG00000202222 LOC105378668 MFSD2A RPS2P12
GH01G040055 1.6 Ensembl ENCODE dbSUPER 10 +161.0 160951 6.0 HDGF PKNOX1 FOXA2 CREB3L1 ARNT ARID4B ZNF766 FOS JUNB TBX21 PPT1 LOC105378668 CTPS1 TRIT1 ENSG00000202222 CAP1
GH01G039979 1.3 Ensembl ENCODE dbSUPER 10.8 +83.2 83177 3.6 BCOR HDAC1 PKNOX1 ESRRA ZMYM3 ZNF664 CTBP1 GATA3 SCRT2 FOS CAP1 MYCL LOC105378668 ENSG00000202222 TRIT1 PABPC4 ENSG00000225903 HEYL PPT1 ZFP69
GH01G039798 1.3 Ensembl ENCODE 10.5 -97.8 -97798 2.4 HDGF FOXA2 CREB3L1 ARNT SIN3A FEZF1 ZNF2 ZNF766 CBX5 ZNF143 HEYL ENSG00000225903 TRIT1 ENSG00000202222 LOC105378668 CAP1 OXCT2 GC01P039799 LOC105378665
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105378668 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105378668 Gene

Chromosome:
1
Start:
39,897,741 bp from pter
End:
39,899,098 bp from pter
Size:
1,358 bases
Orientation:
Plus strand

Genomic View for LOC105378668 Gene

Genes around LOC105378668 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378668 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378668 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378668 Gene

Proteins for LOC105378668 Gene

Post-translational modifications for LOC105378668 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378668 Gene

Domains & Families for LOC105378668 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378668 Gene

Function for LOC105378668 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378668 Gene

Localization for LOC105378668 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105378668 Gene

Pathways & Interactions for LOC105378668 Gene

SuperPathways for LOC105378668 Gene

No Data Available

Interacting Proteins for LOC105378668 Gene

Gene Ontology (GO) - Biological Process for LOC105378668 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378668 Gene

Drugs & Compounds for LOC105378668 Gene

No Compound Related Data Available

Transcripts for LOC105378668 Gene

mRNA/cDNA for LOC105378668 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378668 Gene

No ASD Table

Relevant External Links for LOC105378668 Gene

GeneLoc Exon Structure for
LOC105378668

Expression for LOC105378668 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378668 Gene

Orthologs for LOC105378668 Gene

Evolution for LOC105378668 Gene

ENSEMBL:
Gene Tree for LOC105378668 (if available)
TreeFam:
Gene Tree for LOC105378668 (if available)

No data available for Orthologs for LOC105378668 Gene

Paralogs for LOC105378668 Gene

No data available for Paralogs for LOC105378668 Gene

Variants for LOC105378668 Gene

Sequence variations from dbSNP and Humsavar for LOC105378668 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000703940 -- 39,898,441(+) GGGGA(A/G)TTGTT intron-variant
rs1001763850 -- 39,899,081(+) CATTC(A/C)GCCCT intron-variant, nc-transcript-variant
rs1002931163 -- 39,899,364(+) CTCAG(A/G)AAGAT intron-variant, downstream-variant-500B
rs1003519625 -- 39,897,923(+) AATAC(A/C)CAGAG nc-transcript-variant, reference, missense
rs1004024765 -- 39,899,048(+) CAATC(A/G)CATTA intron-variant, nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105378668 Gene

Disorders for LOC105378668 Gene

No disorders were found for LOC105378668 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378668 Gene

Publications for LOC105378668 Gene

No publications were found for LOC105378668 Gene.

Products for LOC105378668 Gene

Sources for LOC105378668 Gene

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