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Aliases for LOC105378647 Gene

Subcategory (RNA class) for LOC105378647 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378647 Gene

  • Uncharacterized LOC105378647 3
  • RP4-665N4.8 5

External Ids for LOC105378647 Gene

Previous GeneCards Identifiers for LOC105378647 Gene

  • GC01U904659

Summaries for LOC105378647 Gene

GeneCards Summary for LOC105378647 Gene

LOC105378647 (Uncharacterized LOC105378647) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378647 Gene

Genomics for LOC105378647 Gene

Regulatory Elements for LOC105378647 Gene

Enhancers for LOC105378647 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G036385 1.4 ENCODE dbSUPER 19.6 -368.4 -368354 7.8 MLX AGO1 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF263 SP3 NFYC EVA1B THRAP3 LOC105378647 ENSG00000116883 SH3D21 ENSG00000201448 OSCP1 TRAPPC3 STK40 LSM10
GH01G036370 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -356.3 -356301 10.6 HDGF FOXA2 PKNOX1 ARNT ZFP64 ARID4B SIN3A YBX1 FEZF1 DMAP1 CSF3R STK40 AGO1 AGO3 LSM10 RNU4-27P ENSG00000201448 OSCP1 ENSG00000223944 LOC105378647
GH01G035640 1.1 ENCODE 18.9 +378.3 378270 2.6 PKNOX1 FOXA2 MLX CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZMYM1 ENSG00000230163 SFPQ TFAP2E LOC653160 LOC105378647 C1orf216 THRAP3 TRAPPC3 LOC105378645
GH01G036148 1.8 FANTOM5 ENCODE dbSUPER 10.4 -131.1 -131092 4.9 CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 MAP7D1 SFPQ STK40 THRAP3 COL8A2 LOC105378647 EVA1B RPL5P4 AGO3 SH3D21
GH01G036247 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -228.9 -228942 3.0 HDGF FOXA2 ATF1 ARNT ARID4B ZNF48 YY1 TCF12 SLC30A9 GTF3C2 THRAP3 TRAPPC3 LOC105378647 ENSG00000116883 AGO3 AGO1 UBE2V2P4 SH3D21
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105378647 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105378647 Gene

Chromosome:
1
Start:
35,992,109 bp from pter
End:
36,019,780 bp from pter
Size:
27,672 bases
Orientation:
Minus strand

Genomic View for LOC105378647 Gene

Genes around LOC105378647 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378647 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378647 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378647 Gene

Proteins for LOC105378647 Gene

Post-translational modifications for LOC105378647 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378647 Gene

Domains & Families for LOC105378647 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378647 Gene

Function for LOC105378647 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378647 Gene

Localization for LOC105378647 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105378647 Gene

Pathways & Interactions for LOC105378647 Gene

SuperPathways for LOC105378647 Gene

No Data Available

Interacting Proteins for LOC105378647 Gene

Gene Ontology (GO) - Biological Process for LOC105378647 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378647 Gene

Drugs & Compounds for LOC105378647 Gene

No Compound Related Data Available

Transcripts for LOC105378647 Gene

mRNA/cDNA for LOC105378647 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378647 Gene

No ASD Table

Relevant External Links for LOC105378647 Gene

GeneLoc Exon Structure for
LOC105378647

Expression for LOC105378647 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378647 Gene

Orthologs for LOC105378647 Gene

Evolution for LOC105378647 Gene

ENSEMBL:
Gene Tree for LOC105378647 (if available)
TreeFam:
Gene Tree for LOC105378647 (if available)

No data available for Orthologs for LOC105378647 Gene

Paralogs for LOC105378647 Gene

No data available for Paralogs for LOC105378647 Gene

Variants for LOC105378647 Gene

Sequence variations from dbSNP and Humsavar for LOC105378647 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000301709 -- 36,016,237(+) AGTGC(A/T)GTGGC intron-variant
rs1000370881 -- 36,020,366(+) GGCCA(A/G)GTATT intron-variant
rs1000517411 -- 36,014,453(+) GTGCC(C/T)GGCCT intron-variant
rs1000801330 -- 36,017,356(+) CCTAC(A/G)ACTGA intron-variant
rs1000973816 -- 36,022,706(+) GCGGG(G/T)GGATT intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105378647 Gene

Disorders for LOC105378647 Gene

No disorders were found for LOC105378647 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378647 Gene

Publications for LOC105378647 Gene

No publications were found for LOC105378647 Gene.

Products for LOC105378647 Gene

Sources for LOC105378647 Gene

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