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Aliases for LOC105378645 Gene

Subcategory (RNA class) for LOC105378645 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378645 Gene

  • Uncharacterized LOC105378645 3
  • AC004865.2 5

External Ids for LOC105378645 Gene

Previous GeneCards Identifiers for LOC105378645 Gene

  • GC01U905207

Summaries for LOC105378645 Gene

GeneCards Summary for LOC105378645 Gene

LOC105378645 (Uncharacterized LOC105378645) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378645 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378645 Gene

Genomics for LOC105378645 Gene

GeneHancer (GH) Regulatory Elements for LOC105378645 Gene

Promoters and enhancers for LOC105378645 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I035577 Promoter/Enhancer 1.2 Ensembl ENCODE 550.8 +0.6 584 1.1 ZNF687 ZNF3 SUZ12 NR2F1 MAX EBF1 ELF1 E4F1 POLR2A ETV6 LOC105378645 ENSG00000232335 CLSPN TFAP2E
GH01I035640 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.3 -63.1 -63078 2.8 PKNOX1 CLOCK SMAD1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 PSMB2 SFPQ ENSG00000230163 LOC653160 ZMYM1 TFAP2E LOC105378647 ZMYM6 C1orf216 THRAP3
GH01I035706 Enhancer 1.2 FANTOM5 Ensembl ENCODE 11.3 -129.6 -129589 2.1 KLF17 BATF ZNF335 GLIS2 KLF7 EGR2 SP3 ZNF398 ZNF610 GLIS1 GC01M035706 LOC105378645 TFAP2E ENSG00000232335 CLSPN KIAA0319L NCDN TEKT2 AGO1 PIR49848
GH01I035636 Enhancer 1 Ensembl ENCODE 11.7 -59.6 -59586 2.4 HDAC1 HDGF TAF9B NFRKB FEZF1 ZBTB40 SCRT2 BCLAF1 CEBPB ELF1 C1orf216 LOC105378645 TFAP2E KIAA0319L NCDN ENSG00000232335 CLSPN PSMB2 DLGAP3 GC01P035622
GH01I035078 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 4.2 +498.4 498420 2.4 ARNT SIN3A DMAP1 YY1 POLR2B ZNF143 SP3 JUNB REST ZNF592 ZMYM1 ZMYM6 LOC653160 TMEM35B LOC105378645 GC01P035069 EFCAB14P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105378645 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378645 Gene

Genomic Locations for LOC105378645 Gene
chr1:35,569,813-35,578,330
(GRCh38/hg38)
Size:
8,518 bases
Orientation:
Minus strand
chr1:36,035,414-36,043,330
(GRCh37/hg19)

Genomic View for LOC105378645 Gene

Genes around LOC105378645 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378645 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378645 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378645 Gene

Proteins for LOC105378645 Gene

Post-translational modifications for LOC105378645 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378645 Gene

Domains & Families for LOC105378645 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378645 Gene

Function for LOC105378645 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378645 Gene

Localization for LOC105378645 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378645 Gene

Pathways & Interactions for LOC105378645 Gene

SuperPathways for LOC105378645 Gene

No Data Available

Interacting Proteins for LOC105378645 Gene

Gene Ontology (GO) - Biological Process for LOC105378645 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378645 Gene

Drugs & Compounds for LOC105378645 Gene

No Compound Related Data Available

Transcripts for LOC105378645 Gene

mRNA/cDNA for LOC105378645 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378645 Gene

No ASD Table

Relevant External Links for LOC105378645 Gene

GeneLoc Exon Structure for
LOC105378645

Expression for LOC105378645 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378645 Gene

Orthologs for LOC105378645 Gene

Evolution for LOC105378645 Gene

ENSEMBL:
Gene Tree for LOC105378645 (if available)
TreeFam:
Gene Tree for LOC105378645 (if available)

No data available for Orthologs for LOC105378645 Gene

Paralogs for LOC105378645 Gene

No data available for Paralogs for LOC105378645 Gene

Variants for LOC105378645 Gene

Sequence variations from dbSNP and Humsavar for LOC105378645 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000198595 -- 35,573,870(-) G/T intron_variant
rs1000235833 -- 35,578,568(-) G/T non_coding_transcript_variant
rs1001098815 -- 35,579,451(-) T/G upstream_transcript_variant
rs1001279575 -- 35,579,031(-) G/A upstream_transcript_variant
rs1001693418 -- 35,575,518(-) G/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378645 Gene

Disorders for LOC105378645 Gene

No disorders were found for LOC105378645 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378645 Gene

Publications for LOC105378645 Gene

No publications were found for LOC105378645 Gene.

Products for LOC105378645 Gene

Sources for LOC105378645 Gene

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