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Aliases for LOC105378645 Gene

Subcategory (RNA class) for LOC105378645 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378645 Gene

  • Uncharacterized LOC105378645 3
  • RP4-728D4.2 5

External Ids for LOC105378645 Gene

Previous GeneCards Identifiers for LOC105378645 Gene

  • GC01U905207

Summaries for LOC105378645 Gene

GeneCards Summary for LOC105378645 Gene

LOC105378645 (Uncharacterized LOC105378645) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378645 Gene

Genomics for LOC105378645 Gene

Regulatory Elements for LOC105378645 Gene

Enhancers for LOC105378645 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G035706 1.4 FANTOM5 Ensembl ENCODE 11.2 -129.6 -129590 2.1 KLF17 GLIS2 KLF7 FOS EGR2 ZNF263 SP3 ZNF398 REST ZNF610 LOC105378645 TFAP2E ENSG00000232335 CLSPN KIAA0319L NCDN TEKT2 AGO1 GC01M035706 PIR49848
GH01G035636 1.2 Ensembl ENCODE 11.7 -59.6 -59587 2.4 HDGF HDAC1 TBL1XR1 NFRKB FEZF1 ZBTB40 GATA2 SCRT2 RELB HCFC1 C1orf216 LOC105378645 TFAP2E KIAA0319L NCDN ENSG00000232335 CLSPN PSMB2 DLGAP3 GC01P035622
GH01G035640 1.1 ENCODE 11.3 -63.2 -63181 2.6 PKNOX1 FOXA2 MLX CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZMYM1 ENSG00000230163 SFPQ TFAP2E LOC653160 LOC105378647 C1orf216 THRAP3 TRAPPC3 LOC105378645
GH01G035604 0.5 ENCODE 11.4 -27.2 -27213 1.5 JUND SIN3A PRDM10 LOC105378645 TFAP2E C1orf216 NCDN KIAA0319L ENSG00000232335 CLSPN PSMB2 GC01P035622
GH01G035699 0.5 Ensembl 11.2 -121.5 -121471 0.4 ZNF664 ZNF121 ZBTB33 KDM1A TFAP2E LOC105378645 ENSG00000232335 CLSPN NCDN KIAA0319L GC01M035706 LOC105378646
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105378645 on UCSC Golden Path with GeneCards custom track

Promoters for LOC105378645 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000004691 530 401 ZNF3 SUZ12 GATAD2B RBBP5 ARID3A HDAC2 POLR2A EED ETV6 MLLT1

Genomic Location for LOC105378645 Gene

Chromosome:
1
Start:
35,569,813 bp from pter
End:
35,578,330 bp from pter
Size:
8,518 bases
Orientation:
Minus strand

Genomic View for LOC105378645 Gene

Genes around LOC105378645 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378645 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378645 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378645 Gene

Proteins for LOC105378645 Gene

Post-translational modifications for LOC105378645 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378645 Gene

Domains & Families for LOC105378645 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378645 Gene

Function for LOC105378645 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378645 Gene

Localization for LOC105378645 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105378645 Gene

Pathways & Interactions for LOC105378645 Gene

SuperPathways for LOC105378645 Gene

No Data Available

Interacting Proteins for LOC105378645 Gene

Gene Ontology (GO) - Biological Process for LOC105378645 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378645 Gene

Drugs & Compounds for LOC105378645 Gene

No Compound Related Data Available

Transcripts for LOC105378645 Gene

mRNA/cDNA for LOC105378645 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378645 Gene

No ASD Table

Relevant External Links for LOC105378645 Gene

GeneLoc Exon Structure for
LOC105378645

Expression for LOC105378645 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378645 Gene

Orthologs for LOC105378645 Gene

Evolution for LOC105378645 Gene

ENSEMBL:
Gene Tree for LOC105378645 (if available)
TreeFam:
Gene Tree for LOC105378645 (if available)

No data available for Orthologs for LOC105378645 Gene

Paralogs for LOC105378645 Gene

No data available for Paralogs for LOC105378645 Gene

Variants for LOC105378645 Gene

Sequence variations from dbSNP and Humsavar for LOC105378645 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000198595 -- 35,573,870(+) TTTCA(G/T)GCTGG intron-variant
rs1000235833 -- 35,578,568(+) GGGGT(G/T)GGGAA intron-variant, nc-transcript-variant
rs1001098815 -- 35,579,451(+) CAGGT(G/T)GGGGT intron-variant, upstream-variant-2KB
rs1001279575 -- 35,579,031(+) GAGCC(A/G)AGATC intron-variant, upstream-variant-2KB
rs1001693418 -- 35,575,518(+) TGTGA(C/G)TACTG intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105378645 Gene

Disorders for LOC105378645 Gene

No disorders were found for LOC105378645 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378645 Gene

Publications for LOC105378645 Gene

No publications were found for LOC105378645 Gene.

Products for LOC105378645 Gene

Sources for LOC105378645 Gene

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