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Aliases for LOC105378640 Gene

Subcategory (RNA class) for LOC105378640 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105378640 Gene

  • Uncharacterized LOC105378640 3

External Ids for LOC105378640 Gene

Previous GeneCards Identifiers for LOC105378640 Gene

  • GC01U904463

Summaries for LOC105378640 Gene

GeneCards Summary for LOC105378640 Gene

LOC105378640 (Uncharacterized LOC105378640) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378640 Gene

Genomics for LOC105378640 Gene

Regulatory Elements for LOC105378640 Gene

Enhancers for LOC105378640 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G034407 0.6 ENCODE 0.3 +42.5 42523 0.2 ZNF687 ZHX2 DPF2 FOXA1 JUND GATA3 CTBP1 CREB1 FOSL2 FOS LOC105378640 GC01P034566
GH01G034406 0.6 ENCODE 0.3 +41.9 41890 0.8 ZNF263 ZNF687 NFIB ZHX2 ZIC2 GATA3 NFIC FOS FOSL2 LOC105378640 GC01P034566
GH01G034396 0.2 ENCODE 0.3 +31.4 31373 0.2 LOC105378640 GC01P034566
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105378640 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105378640 Gene

Chromosome:
1
Start:
34,364,822 bp from pter
End:
34,366,065 bp from pter
Size:
1,244 bases
Orientation:
Plus strand

Genomic View for LOC105378640 Gene

Genes around LOC105378640 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378640 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378640 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378640 Gene

Proteins for LOC105378640 Gene

Post-translational modifications for LOC105378640 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378640 Gene

Domains & Families for LOC105378640 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378640 Gene

Function for LOC105378640 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378640 Gene

Localization for LOC105378640 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105378640 Gene

Pathways & Interactions for LOC105378640 Gene

SuperPathways for LOC105378640 Gene

No Data Available

Interacting Proteins for LOC105378640 Gene

Gene Ontology (GO) - Biological Process for LOC105378640 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378640 Gene

Drugs & Compounds for LOC105378640 Gene

No Compound Related Data Available

Transcripts for LOC105378640 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378640 Gene

No ASD Table

Relevant External Links for LOC105378640 Gene

GeneLoc Exon Structure for
LOC105378640

No data available for mRNA/cDNA for LOC105378640 Gene

Expression for LOC105378640 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378640 Gene

Orthologs for LOC105378640 Gene

No data available for Orthologs and Evolution for LOC105378640 Gene

Paralogs for LOC105378640 Gene

No data available for Paralogs for LOC105378640 Gene

Variants for LOC105378640 Gene

Sequence variations from dbSNP and Humsavar for LOC105378640 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000222084 -- 34,364,131(+) TGCCA(A/G)AGAAA upstream-variant-2KB
rs1000445478 -- 34,366,364(+) CTATA(G/T)AAATC downstream-variant-500B
rs1002824298 -- 34,366,093(+) TTCCT(A/G)TCCCA downstream-variant-500B
rs1003277750 -- 34,363,504(+) AATCA(A/T)ATCAC upstream-variant-2KB
rs1003349026 -- 34,364,744(+) CAGAG(C/G)GGGAC upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105378640 Gene

Disorders for LOC105378640 Gene

No disorders were found for LOC105378640 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378640 Gene

Publications for LOC105378640 Gene

No publications were found for LOC105378640 Gene.

Products for LOC105378640 Gene

Sources for LOC105378640 Gene

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