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Aliases for LOC105378638 Gene

Subcategory (RNA class) for LOC105378638 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105378638 Gene

  • Uncharacterized LOC105378638 3

External Ids for LOC105378638 Gene

Previous GeneCards Identifiers for LOC105378638 Gene

  • GC01U904985

Summaries for LOC105378638 Gene

GeneCards Summary for LOC105378638 Gene

LOC105378638 (Uncharacterized LOC105378638) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378638 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378638 Gene

Genomics for LOC105378638 Gene

Regulatory Elements for LOC105378638 Gene

Enhancers for LOC105378638 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H033633 0.8 ENCODE 0.3 +28.2 28204 0 CTCF RB1 MAX ZNF384 RAD21 ZKSCAN1 TEAD3 SMC3 ZNF143 ZNF600 LOC105378638 PIR59446
GH01H033635 0.5 ENCODE 0.3 +31.0 30963 0 POLR2A MAX USF2 REST PIR59446 LOC105378638
GH01H033665 0.3 FANTOM5 0.2 +60.4 60429 0 ZNF362 PIR59446 LOC105378638
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105378638 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105378638 Gene

Chromosome:
1
Start:
33,605,002 bp from pter
End:
33,610,152 bp from pter
Size:
5,151 bases
Orientation:
Plus strand

Genomic View for LOC105378638 Gene

Genes around LOC105378638 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378638 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378638 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378638 Gene

Proteins for LOC105378638 Gene

Post-translational modifications for LOC105378638 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378638 Gene

Domains & Families for LOC105378638 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378638 Gene

Function for LOC105378638 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378638 Gene

Localization for LOC105378638 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378638 Gene

Pathways & Interactions for LOC105378638 Gene

SuperPathways for LOC105378638 Gene

No Data Available

Interacting Proteins for LOC105378638 Gene

Gene Ontology (GO) - Biological Process for LOC105378638 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378638 Gene

Drugs & Compounds for LOC105378638 Gene

No Compound Related Data Available

Transcripts for LOC105378638 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378638 Gene

No ASD Table

Relevant External Links for LOC105378638 Gene

GeneLoc Exon Structure for
LOC105378638

No data available for mRNA/cDNA for LOC105378638 Gene

Expression for LOC105378638 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378638 Gene

Orthologs for LOC105378638 Gene

No data available for Orthologs and Evolution for LOC105378638 Gene

Paralogs for LOC105378638 Gene

No data available for Paralogs for LOC105378638 Gene

Variants for LOC105378638 Gene

Sequence variations from dbSNP and Humsavar for LOC105378638 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000629260 -- 33,608,437(+) TCAGG(-/GA)GAGAG intron-variant
rs1000876845 -- 33,606,676(+) ACAGA(A/C)AGGCT intron-variant
rs1001187135 -- 33,607,976(+) AGGAC(C/T)GGGCC intron-variant
rs1001616713 -- 33,608,157(+) GTGAG(C/T)CCAAG intron-variant
rs1002300244 -- 33,609,744(+) CAATA(C/T)ATATA intron-variant, nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105378638 Gene

Disorders for LOC105378638 Gene

No disorders were found for LOC105378638 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378638 Gene

Publications for LOC105378638 Gene

No publications were found for LOC105378638 Gene.

Products for LOC105378638 Gene

Sources for LOC105378638 Gene

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