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Aliases for LOC105378632 Gene

Subcategory (RNA class) for LOC105378632 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105378632 Gene

  • Uncharacterized LOC105378632 3

External Ids for LOC105378632 Gene

Previous GeneCards Identifiers for LOC105378632 Gene

  • GC01U904241

Summaries for LOC105378632 Gene

GeneCards Summary for LOC105378632 Gene

LOC105378632 (Uncharacterized LOC105378632) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378632 Gene

Genomics for LOC105378632 Gene

Regulatory Elements for LOC105378632 Gene

Enhancers for LOC105378632 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G032904 0.9 ENCODE dbSUPER 0.7 -1.6 -1584 1.5 BCOR POLR2A ZNF366 ZNF512 NRF1 ADNP SMC3 ZMYM3 HNF4A S100PBP LOC105378632 PIR42811
GH01G032902 0.8 dbSUPER 0.7 +0.5 535 1.0 RB1 SIN3A ZNF48 ZNF2 RAD21 GLIS2 ZNF143 DEK ZNF263 ZNF654 LOC105378632 TMEM54
GH01G032908 0.7 FANTOM5 dbSUPER 0.7 -4.9 -4923 0.3 IKZF1 GABPA RNF19B LOC105378632 PIR42811
GH01G032906 0.2 dbSUPER 0.7 -3.5 -3491 0.7 LOC105378632 PIR42811
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105378632 on UCSC Golden Path with GeneCards custom track

Promoters for LOC105378632 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000004425 1703 1001 RB1 NFIB SIN3A KLF17 NFXL1 ZBTB40 GLIS2 NFIC IKZF1 GLIS1

Genomic Location for LOC105378632 Gene

Chromosome:
1
Start:
32,901,660 bp from pter
End:
32,903,203 bp from pter
Size:
1,544 bases
Orientation:
Minus strand

Genomic View for LOC105378632 Gene

Genes around LOC105378632 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378632 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378632 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378632 Gene

Proteins for LOC105378632 Gene

Post-translational modifications for LOC105378632 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378632 Gene

Domains & Families for LOC105378632 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378632 Gene

Function for LOC105378632 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378632 Gene

Localization for LOC105378632 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105378632 Gene

Pathways & Interactions for LOC105378632 Gene

SuperPathways for LOC105378632 Gene

No Data Available

Interacting Proteins for LOC105378632 Gene

Gene Ontology (GO) - Biological Process for LOC105378632 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378632 Gene

Drugs & Compounds for LOC105378632 Gene

No Compound Related Data Available

Transcripts for LOC105378632 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378632 Gene

No ASD Table

Relevant External Links for LOC105378632 Gene

GeneLoc Exon Structure for
LOC105378632

No data available for mRNA/cDNA for LOC105378632 Gene

Expression for LOC105378632 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378632 Gene

Orthologs for LOC105378632 Gene

No data available for Orthologs and Evolution for LOC105378632 Gene

Paralogs for LOC105378632 Gene

No data available for Paralogs for LOC105378632 Gene

Variants for LOC105378632 Gene

Sequence variations from dbSNP and Humsavar for LOC105378632 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1001058557 -- 32,901,885(+) TAGTC(C/G)GGAGG nc-transcript-variant, upstream-variant-2KB
rs1001110439 -- 32,901,223(+) CTCAC(C/T)GAGGC downstream-variant-500B, reference, missense
rs1001173112 -- 32,904,229(+) CTCTT(-/TACTC)TAACC upstream-variant-2KB
rs1001688400 -- 32,901,317(+) CCCAT(C/T)CCGCT downstream-variant-500B, utr-variant-5-prime
rs1002116319 -- 32,903,083(+) TTTAG(G/T)AGGGC intron-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105378632 Gene

Disorders for LOC105378632 Gene

No disorders were found for LOC105378632 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378632 Gene

Publications for LOC105378632 Gene

No publications were found for LOC105378632 Gene.

Products for LOC105378632 Gene

Sources for LOC105378632 Gene

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