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Aliases for LOC105378626 Gene

Subcategory (RNA class) for LOC105378626 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378626 Gene

  • Uncharacterized LOC105378626 3
  • AC114488.1 5

External Ids for LOC105378626 Gene

Previous GeneCards Identifiers for LOC105378626 Gene

  • GC01U904538

Summaries for LOC105378626 Gene

GeneCards Summary for LOC105378626 Gene

LOC105378626 (Uncharacterized LOC105378626) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378626 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378626 Gene

Genomics for LOC105378626 Gene

GeneHancer (GH) Regulatory Elements for LOC105378626 Gene

Promoters and enhancers for LOC105378626 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I031579 Promoter/Enhancer 0.9 EPDnew dbSUPER 550.8 -0.9 -858 0.1 SNIP1 ZNF157 LOC105378626 TINAGL1 SNRNP40 TSSK3 TXLNA TMEM39B KHDRBS1 FAM229A ZBTB8B HCRTR1
GH01I031924 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 30.1 -357.9 -357911 22.1 CLOCK MLX ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 GC01P031934 PTP4A2 TXLNA SNRNP40 KHDRBS1 RBBP4 ENSG00000229447 TSSK3 ZBTB8A TMEM39B
GH01I031394 Enhancer 1.4 Ensembl ENCODE dbSUPER 20.2 +183.1 183121 1.2 HDGF PKNOX1 SMAD1 ATF1 ARID4B SIN3A ZNF48 ZNF121 GLIS2 E2F8 SERINC2 LOC105378626 SNRNP40 TSSK3 TXLNA ENSG00000229044 TINAGL1 LOC105378623
GH01I031643 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 10.8 -70.3 -70286 10.2 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 GC01M031634 SNRNP40 KPNA6 TXLNA TSSK3 EIF3I FAM229A COL16A1 LOC105378626 TINAGL1
GH01I031699 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.5 -124.9 -124858 6.7 SMAD1 FOXA2 MLX ARID4B DMAP1 E2F8 ZNF143 FOS DEK SP5 COL16A1 ENSG00000235790 ADGRB2 SNRNP40 PEF1 TINAGL1 LOC105378626 TSSK3 MTMR9LP GC01M031668
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105378626 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378626 Gene

Genomic Locations for LOC105378626 Gene
chr1:31,568,236-31,577,922
(GRCh38/hg38)
Size:
9,687 bases
Orientation:
Minus strand
chr1:32,037,186-32,041,174
(GRCh37/hg19)

Genomic View for LOC105378626 Gene

Genes around LOC105378626 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378626 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378626 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378626 Gene

Proteins for LOC105378626 Gene

Post-translational modifications for LOC105378626 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378626 Gene

Domains & Families for LOC105378626 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378626 Gene

Function for LOC105378626 Gene

Phenotypes From GWAS Catalog for LOC105378626 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378626 Gene

Localization for LOC105378626 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378626 Gene

Pathways & Interactions for LOC105378626 Gene

SuperPathways for LOC105378626 Gene

No Data Available

Interacting Proteins for LOC105378626 Gene

Gene Ontology (GO) - Biological Process for LOC105378626 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378626 Gene

Drugs & Compounds for LOC105378626 Gene

No Compound Related Data Available

Transcripts for LOC105378626 Gene

mRNA/cDNA for LOC105378626 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378626 Gene

No ASD Table

Relevant External Links for LOC105378626 Gene

GeneLoc Exon Structure for
LOC105378626

Expression for LOC105378626 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378626 Gene

Orthologs for LOC105378626 Gene

Evolution for LOC105378626 Gene

ENSEMBL:
Gene Tree for LOC105378626 (if available)
TreeFam:
Gene Tree for LOC105378626 (if available)

No data available for Orthologs for LOC105378626 Gene

Paralogs for LOC105378626 Gene

No data available for Paralogs for LOC105378626 Gene

Variants for LOC105378626 Gene

Sequence variations from dbSNP and Humsavar for LOC105378626 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000942942 -- 31,566,641(-) G/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1001228661 -- 31,570,307(-) G/A intron_variant, non_coding_transcript_variant
rs1001454617 -- 31,575,652(-) C/G non_coding_transcript_variant
rs1001555494 -- 31,574,860(-) T/C intron_variant
rs1001570509 -- 31,575,377(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378626 Gene

Disorders for LOC105378626 Gene

No disorders were found for LOC105378626 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378626 Gene

Publications for LOC105378626 Gene

No publications were found for LOC105378626 Gene.

Products for LOC105378626 Gene

Sources for LOC105378626 Gene

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