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Aliases for LOC105378626 Gene

Subcategory (RNA class) for LOC105378626 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378626 Gene

  • Uncharacterized LOC105378626 3
  • AC114488.1 5

External Ids for LOC105378626 Gene

Previous GeneCards Identifiers for LOC105378626 Gene

  • GC01U904538

Summaries for LOC105378626 Gene

GeneCards Summary for LOC105378626 Gene

LOC105378626 (Uncharacterized LOC105378626) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378626 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378626 Gene

Genomics for LOC105378626 Gene

Regulatory Elements for LOC105378626 Gene

Enhancers for LOC105378626 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H031924 2.1 FANTOM5 Ensembl ENCODE dbSUPER 22 -357.9 -357911 22 MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 TXLNA SNRNP40 KHDRBS1 RBBP4 ENSG00000229447 TSSK3 ZBTB8A TMEM39B PUM1 EIF3I
GH01H031507 1.9 FANTOM5 Ensembl ENCODE dbSUPER 21.2 +67.6 67642 5 HDGF FOXA2 MLX ARID4B DMAP1 YBX1 YY1 SLC30A9 ZNF143 FOS LOC105378626 SERINC2 KPNA6 TINAGL1 PUM1 GC01P031511 LOC105378627
GH01H031548 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.5 +28.4 28390 2 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A YY1 ZNF143 FOS SP3 SERINC2 LOC105378626 TINAGL1 RNU6-40P LOC105378627 GC01P031511
GH01H030801 1.5 Ensembl ENCODE dbSUPER 13.6 +776.0 776012 0 ATF1 GLIS2 CBX5 ZNF143 ATF7 YY2 TSHZ1 REST ZNF662 ZNF623 ENSG00000229447 SNRNP40 PUM1 LOC105378626 SDC3 LAPTM5 LOC400748 MATN1 MATN1-AS1 ADGRB2
GH01H031605 0.9 ENCODE 22.6 -28.1 -28112 1 HDGF PKNOX1 TBL1XR1 RB1 BMI1 BATF EGR1 ZNF207 ATF7 ETV6 LOC105378626 SNRNP40 TSSK3 TXLNA ENSG00000229447 TINAGL1 KHDRBS1 PEF1 SERINC2 TMEM39B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105378626 on UCSC Golden Path with GeneCards custom track

Promoters for LOC105378626 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000004209 422 2201 ELF3 TBP PTBP1 ARID4B NFXL1 RARA ZNF143 EGR2 SP5 PPARG

Genomic Location for LOC105378626 Gene

Chromosome:
1
Start:
31,568,236 bp from pter
End:
31,577,922 bp from pter
Size:
9,687 bases
Orientation:
Minus strand

Genomic View for LOC105378626 Gene

Genes around LOC105378626 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378626 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378626 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378626 Gene

Proteins for LOC105378626 Gene

Post-translational modifications for LOC105378626 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378626 Gene

Domains & Families for LOC105378626 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378626 Gene

Function for LOC105378626 Gene

Phenotypes From GWAS Catalog for LOC105378626 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378626 Gene

Localization for LOC105378626 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378626 Gene

Pathways & Interactions for LOC105378626 Gene

SuperPathways for LOC105378626 Gene

No Data Available

Interacting Proteins for LOC105378626 Gene

Gene Ontology (GO) - Biological Process for LOC105378626 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378626 Gene

Drugs & Compounds for LOC105378626 Gene

No Compound Related Data Available

Transcripts for LOC105378626 Gene

mRNA/cDNA for LOC105378626 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378626 Gene

No ASD Table

Relevant External Links for LOC105378626 Gene

GeneLoc Exon Structure for
LOC105378626

Expression for LOC105378626 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378626 Gene

Orthologs for LOC105378626 Gene

Evolution for LOC105378626 Gene

ENSEMBL:
Gene Tree for LOC105378626 (if available)
TreeFam:
Gene Tree for LOC105378626 (if available)

No data available for Orthologs for LOC105378626 Gene

Paralogs for LOC105378626 Gene

No data available for Paralogs for LOC105378626 Gene

Variants for LOC105378626 Gene

Sequence variations from dbSNP and Humsavar for LOC105378626 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000889647 -- 31,572,312(+) TGGGT(-/G)GGGGG intron-variant
rs1000942942 -- 31,566,641(+) TCTCT(A/G)GCAAG nc-transcript-variant
rs1001228661 -- 31,570,307(+) GTGGT(A/G)GAGCC intron-variant, nc-transcript-variant
rs1001454617 -- 31,575,652(+) AGAGA(C/G)CTCTG nc-transcript-variant, upstream-variant-2KB
rs1001555494 -- 31,574,860(+) AGATA(C/T)ACACA intron-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105378626 Gene

Disorders for LOC105378626 Gene

No disorders were found for LOC105378626 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378626 Gene

Publications for LOC105378626 Gene

No publications were found for LOC105378626 Gene.

Products for LOC105378626 Gene

Sources for LOC105378626 Gene

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