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Aliases for LOC105378500 Gene

Subcategory (RNA class) for LOC105378500 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378500 Gene

  • Uncharacterized LOC105378500 3
  • RP11-501J20.5 5

External Ids for LOC105378500 Gene

Previous GeneCards Identifiers for LOC105378500 Gene

  • GC10U902211

Summaries for LOC105378500 Gene

GeneCards Summary for LOC105378500 Gene

LOC105378500 (Uncharacterized LOC105378500) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378500 Gene

Genomics for LOC105378500 Gene

Regulatory Elements for LOC105378500 Gene

Enhancers for LOC105378500 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F117221 0.6 ENCODE 12.7 +21.2 21179 0.2 KLF1 INSM2 ZNF366 ZNF600 KLF8 ZNF639 RFX1 ZFP37 ZEB2 ZNF843 LOC105378500 GC10P117233 PIR41869 GC10P117206
GH10F117263 0.8 ENCODE 12.3 -20.7 -20681 0.1 SCRT1 SCRT2 ZIC2 SLC18A2 LOC105378500 PDZD8 ENSG00000277879
GH10F117264 0.6 ENCODE 12.3 -22.2 -22216 0.9 SOX13 GATAD2A SOX5 ZNF687 RNF2 L3MBTL2 MLX MNT TGIF2 GATA3 SLC18A2 PDZD8 LOC105378500 ENSG00000277879
GH10F117216 0.9 Ensembl ENCODE 12.2 +25.7 25663 1.8 ARID4B SIN3A DMAP1 ZNF48 ZNF2 GLIS2 ZNF143 ZNF263 MIER2 REST ENSG00000231104 SLC18A2 LOC105378500 GC10P117206 PIR41869 GC10P117233
GH10F117268 0.4 FANTOM5 12.2 -26.4 -26351 0.5 ZNF263 ZNF366 ZNF512 SCRT2 ETV6 ZNF600 SLC18A2 PDZD8 LOC105378500 ENSG00000277879 PIR32064
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LOC105378500 on UCSC Golden Path with GeneCards custom track

Promoters for LOC105378500 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001764516 1263 1001 PKNOX1 ESRRA TAL1 SIN3A CEBPG CTBP1 GATA3 POLR2A NCOR1 SCRT2

Genomic Location for LOC105378500 Gene

Chromosome:
10
Start:
117,239,600 bp from pter
End:
117,242,763 bp from pter
Size:
3,164 bases
Orientation:
Minus strand

Genomic View for LOC105378500 Gene

Genes around LOC105378500 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378500 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378500 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378500 Gene

Proteins for LOC105378500 Gene

Post-translational modifications for LOC105378500 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378500 Gene

Domains & Families for LOC105378500 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378500 Gene

Function for LOC105378500 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378500 Gene

Localization for LOC105378500 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105378500 Gene

Pathways & Interactions for LOC105378500 Gene

SuperPathways for LOC105378500 Gene

No Data Available

Interacting Proteins for LOC105378500 Gene

Gene Ontology (GO) - Biological Process for LOC105378500 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378500 Gene

Transcripts for LOC105378500 Gene

mRNA/cDNA for LOC105378500 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378500 Gene

No ASD Table

Relevant External Links for LOC105378500 Gene

GeneLoc Exon Structure for
LOC105378500

Expression for LOC105378500 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LOC105378500 Gene

Orthologs for LOC105378500 Gene

Evolution for LOC105378500 Gene

ENSEMBL:
Gene Tree for LOC105378500 (if available)
TreeFam:
Gene Tree for LOC105378500 (if available)

No data available for Orthologs for LOC105378500 Gene

Paralogs for LOC105378500 Gene

No data available for Paralogs for LOC105378500 Gene

Variants for LOC105378500 Gene

Sequence variations from dbSNP and Humsavar for LOC105378500 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1042543 -- 117,241,743(-) GCGAG(C/T)GGCGG intron-variant, reference, missense
rs111487087 -- 117,239,951(+) GAGAG(A/C/T)GGGGG downstream-variant-500B, upstream-variant-2KB
rs11197932 -- 117,243,029(+) GCCTG(A/G)CCTGT intron-variant, upstream-variant-2KB
rs112253480 -- 117,244,463(+) TATGT(C/T)TCTGT intron-variant, upstream-variant-2KB
rs112626805 -- 117,243,950(+) CCTTG(C/T)CATTC intron-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105378500 Gene

Disorders for LOC105378500 Gene

No disorders were found for LOC105378500 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378500 Gene

Publications for LOC105378500 Gene

No publications were found for LOC105378500 Gene.

Products for LOC105378500 Gene

Sources for LOC105378500 Gene

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