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Aliases for LOC105378355 Gene

Subcategory (RNA class) for LOC105378355 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105378355 Gene

  • Uncharacterized LOC105378355 3

External Ids for LOC105378355 Gene

Previous GeneCards Identifiers for LOC105378355 Gene

  • GC10U902427

Summaries for LOC105378355 Gene

GeneCards Summary for LOC105378355 Gene

LOC105378355 (Uncharacterized LOC105378355) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378355 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378355 Gene

Genomics for LOC105378355 Gene

Regulatory Elements for LOC105378355 Gene

Enhancers for LOC105378355 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H071597 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -44.3 -44289 2 SOX13 FOXA2 PKNOX1 KLF17 MAX RAD21 YY1 ZFHX2 ZNF316 POLR2A CDH23 PSAP CDH23-AS1 C10orf105 VSIR LOC105378355 GC10P071695
GH10H071546 1 Ensembl ENCODE 0.4 +5.3 5313 3 BCOR CTCF PTBP1 GTF2E2 ZMYM3 MAX NFXL1 ZBTB40 RAD21 ZIC2 CDH23-AS1 CDH23 LOC105378355
GH10H071632 1.6 Ensembl ENCODE dbSUPER 0.2 -82.6 -82572 7 HDGF FOXA2 PKNOX1 MLX ARNT ARID4B FEZF1 DMAP1 YY1 SLC30A9 CDH23 SLC29A3 CDH23-AS1 VSIR PSAP SGPL1 GC10P071695 LOC105378355
GH10H071570 0.7 ENCODE 0.4 -16.2 -16193 0 BCOR CTCF RB1 RAD21 ZNF121 SMC3 ZNF143 NR2F6 ZNF654 NR2F1 SLC29A3 CDH23-AS1 LOC105378355 GC10P071695
GH10H071550 0.4 ENCODE 0.7 +3.3 3268 0 ZNF398 CDH23-AS1 CDH23 LOC105378355
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105378355 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105378355 Gene

Chromosome:
10
Start:
71,551,050 bp from pter
End:
71,554,006 bp from pter
Size:
2,957 bases
Orientation:
Minus strand

Genomic View for LOC105378355 Gene

Genes around LOC105378355 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378355 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378355 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378355 Gene

Proteins for LOC105378355 Gene

Post-translational modifications for LOC105378355 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378355 Gene

Domains & Families for LOC105378355 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378355 Gene

Function for LOC105378355 Gene

Phenotypes From GWAS Catalog for LOC105378355 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378355 Gene

Localization for LOC105378355 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378355 Gene

Pathways & Interactions for LOC105378355 Gene

SuperPathways for LOC105378355 Gene

No Data Available

Interacting Proteins for LOC105378355 Gene

Gene Ontology (GO) - Biological Process for LOC105378355 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378355 Gene

Drugs & Compounds for LOC105378355 Gene

No Compound Related Data Available

Transcripts for LOC105378355 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378355 Gene

No ASD Table

Relevant External Links for LOC105378355 Gene

GeneLoc Exon Structure for
LOC105378355

No data available for mRNA/cDNA for LOC105378355 Gene

Expression for LOC105378355 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378355 Gene

Orthologs for LOC105378355 Gene

No data available for Orthologs and Evolution for LOC105378355 Gene

Paralogs for LOC105378355 Gene

No data available for Paralogs for LOC105378355 Gene

Variants for LOC105378355 Gene

Sequence variations from dbSNP and Humsavar for LOC105378355 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000219335 -- 71,552,525(+) CTCAG(-/A)AAAAA intron-variant
rs1000310464 -- 71,554,242(+) GCCCC(A/G)GCTGG intron-variant, nc-transcript-variant
rs1002132222 -- 71,552,186(+) CTGAG(A/G)CTCAG intron-variant
rs1002735304 -- 71,550,823(+) CCTGG(C/G)GGAAG intron-variant, downstream-variant-500B
rs1002744856 -- 71,555,916(+) CCAGG(C/T)ATGTG intron-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105378355 Gene

Disorders for LOC105378355 Gene

No disorders were found for LOC105378355 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378355 Gene

Publications for LOC105378355 Gene

No publications were found for LOC105378355 Gene.

Products for LOC105378355 Gene

Sources for LOC105378355 Gene

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