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Aliases for LOC105378355 Gene

Subcategory (RNA class) for LOC105378355 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105378355 Gene

  • Uncharacterized LOC105378355 3

External Ids for LOC105378355 Gene

Previous GeneCards Identifiers for LOC105378355 Gene

  • GC10U902427

Summaries for LOC105378355 Gene

GeneCards Summary for LOC105378355 Gene

LOC105378355 (Uncharacterized LOC105378355) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105378355 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378355 Gene

Genomics for LOC105378355 Gene

GeneHancer (GH) Regulatory Elements for LOC105378355 Gene

Promoters and enhancers for LOC105378355 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I071597 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -44.3 -44289 2.3 MEIS2 SOX13 FOXA2 PKNOX1 KLF17 MAX RAD21 YY1 ZFHX2 ZNF316 CDH23 PSAP CDH23-AS1 C10orf105 VSIR LOC105378355 GC10P071695
GH10I071546 Enhancer 0.9 Ensembl ENCODE 0.4 +5.3 5313 3.4 BCOR CTCF GTF2E2 MAX ZMYM3 NFXL1 ZBTB40 ZIC2 RAD21 ZNF143 CDH23-AS1 CDH23 LOC105378355
GH10I071632 Enhancer 1.5 Ensembl ENCODE dbSUPER 0.2 -82.6 -82572 7.5 HDGF PKNOX1 SMAD1 FOXA2 MLX ARNT ARID4B FEZF1 DMAP1 YY1 DNAJB12 CDH23 SLC29A3 CDH23-AS1 VSIR PSAP SGPL1 GC10P071695 LOC105378355
GH10I071570 Enhancer 0.7 ENCODE 0.4 -16.2 -16193 0.2 BCOR CTCF ZNF654 RB1 NR2F1 TRIM22 REST RAD21 ZNF121 MTA1 SLC29A3 CDH23-AS1 LOC105378355 GC10P071695 CDH23
GH10I071578 Enhancer 0.9 dbSUPER 0.3 -32.5 -32472 15.6 ELF3 BMI1 ZSCAN9 RAD21 ZBTB40 RARA YY1 TCF12 ZNF23 ZNF766 CDH23 CDH23-AS1 SLC29A3 C10orf105 LOC105378355 GC10P071695
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105378355 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105378355 Gene

Genomic Locations for LOC105378355 Gene
chr10:71,551,050-71,554,006
(GRCh38/hg38)
Size:
2,957 bases
Orientation:
Minus strand

Genomic View for LOC105378355 Gene

Genes around LOC105378355 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378355 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378355 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378355 Gene

Proteins for LOC105378355 Gene

Post-translational modifications for LOC105378355 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378355 Gene

Domains & Families for LOC105378355 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378355 Gene

Function for LOC105378355 Gene

Phenotypes From GWAS Catalog for LOC105378355 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378355 Gene

Localization for LOC105378355 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105378355 Gene

Pathways & Interactions for LOC105378355 Gene

SuperPathways for LOC105378355 Gene

No Data Available

Interacting Proteins for LOC105378355 Gene

Gene Ontology (GO) - Biological Process for LOC105378355 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378355 Gene

Drugs & Compounds for LOC105378355 Gene

No Compound Related Data Available

Transcripts for LOC105378355 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378355 Gene

No ASD Table

Relevant External Links for LOC105378355 Gene

GeneLoc Exon Structure for
LOC105378355

No data available for mRNA/cDNA for LOC105378355 Gene

Expression for LOC105378355 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378355 Gene

Orthologs for LOC105378355 Gene

No data available for Orthologs and Evolution for LOC105378355 Gene

Paralogs for LOC105378355 Gene

No data available for Paralogs for LOC105378355 Gene

Variants for LOC105378355 Gene

Sequence variations from dbSNP and Humsavar for LOC105378355 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000219335 -- 71,552,525(-) AAAAAAAA/AAAAAAA intron_variant
rs1000310464 -- 71,554,242(-) A/G non_coding_transcript_variant
rs1002132222 -- 71,552,186(-) G/A intron_variant
rs1002735304 -- 71,550,823(-) G/C downstream_transcript_variant
rs1002744856 -- 71,555,916(-) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105378355 Gene

Disorders for LOC105378355 Gene

No disorders were found for LOC105378355 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378355 Gene

Publications for LOC105378355 Gene

No publications were found for LOC105378355 Gene.

Products for LOC105378355 Gene

Sources for LOC105378355 Gene

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