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Aliases for LOC105378117 Gene

Subcategory (RNA class) for LOC105378117 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105378117 Gene

  • Uncharacterized LOC105378117 3

External Ids for LOC105378117 Gene

Previous GeneCards Identifiers for LOC105378117 Gene

  • GC06U902785

Summaries for LOC105378117 Gene

GeneCards Summary for LOC105378117 Gene

LOC105378117 (Uncharacterized LOC105378117) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378117 Gene

Genomics for LOC105378117 Gene

Regulatory Elements for LOC105378117 Gene

Enhancers for LOC105378117 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F166024 0.9 Ensembl ENCODE 0.8 +0.1 110 2.0 PKNOX1 ZNF680 ZFP64 BHLHE40 GATA2 SMARCA4 POLR2A PBX2 FOS MAFK LOC105378117 GAPDHP72
GH06F166004 1.7 FANTOM5 Ensembl ENCODE 0.3 -18.3 -18294 4.8 PKNOX1 SIN3A FEZF1 ZNF2 FOS ZNF263 REST TBX21 KAT8 SSRP1 FGFR1OP T PRR18 LINC00473 LOC105378117
GH06F166032 0.9 Ensembl ENCODE 0.4 +7.5 7517 1.0 GTF2F1 CTCF STAT1 THRB RAD21 NFYB SCRT2 PRDM10 FOXP2 TRIM28 LOC105378117 GAPDHP72
GH06F166029 0.4 Ensembl 0.8 +4.1 4135 0.2 EBF1 LOC105378117 GAPDHP72
GH06F166045 0.7 ENCODE 0.3 +21.0 20984 1.8 BHLHE40 MAFG CEBPB REST EP300 JUND ZNF316 MAFF FOS MAFK GAPDHP72 LOC105378117
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105378117 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105378117 Gene

Chromosome:
6
Start:
166,025,366 bp from pter
End:
166,042,646 bp from pter
Size:
17,281 bases
Orientation:
Plus strand

Genomic View for LOC105378117 Gene

Genes around LOC105378117 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378117 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378117 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378117 Gene

Proteins for LOC105378117 Gene

Post-translational modifications for LOC105378117 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378117 Gene

Domains & Families for LOC105378117 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378117 Gene

Function for LOC105378117 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378117 Gene

Localization for LOC105378117 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105378117 Gene

Pathways & Interactions for LOC105378117 Gene

SuperPathways for LOC105378117 Gene

No Data Available

Interacting Proteins for LOC105378117 Gene

Gene Ontology (GO) - Biological Process for LOC105378117 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378117 Gene

Transcripts for LOC105378117 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378117 Gene

No ASD Table

Relevant External Links for LOC105378117 Gene

GeneLoc Exon Structure for
LOC105378117

No data available for mRNA/cDNA for LOC105378117 Gene

Expression for LOC105378117 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LOC105378117 Gene

Orthologs for LOC105378117 Gene

No data available for Orthologs and Evolution for LOC105378117 Gene

Paralogs for LOC105378117 Gene

No data available for Paralogs for LOC105378117 Gene

Variants for LOC105378117 Gene

Sequence variations from dbSNP and Humsavar for LOC105378117 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1066429 -- 166,034,658(-) agaag(A/G)ggaag intron-variant
rs1083335 -- 166,038,563(-) ttcca(A/C)aagat intron-variant
rs111218893 -- 166,030,980(+) ATTAT(A/T)TATGA intron-variant
rs111327694 -- 166,030,487(+) ACAGG(A/G)AAAGA intron-variant
rs111740237 -- 166,035,445(+) AAAGA(A/G)AGAGA intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105378117 Gene

Disorders for LOC105378117 Gene

No disorders were found for LOC105378117 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378117 Gene

Publications for LOC105378117 Gene

No publications were found for LOC105378117 Gene.

Products for LOC105378117 Gene

Sources for LOC105378117 Gene

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