Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105378024 Gene

Subcategory (RNA class) for LOC105378024 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105378024 Gene

  • Uncharacterized LOC105378024 3

External Ids for LOC105378024 Gene

Previous GeneCards Identifiers for LOC105378024 Gene

  • GC06U903127

Summaries for LOC105378024 Gene

GeneCards Summary for LOC105378024 Gene

LOC105378024 (Uncharacterized LOC105378024) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378024 Gene

Genomics for LOC105378024 Gene

Regulatory Elements for LOC105378024 Gene

Enhancers for LOC105378024 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G139545 1 Ensembl ENCODE 0.7 -0.7 -654 0.8 ZBTB40 RAD21 CHAMP1 GATA3 ZNF316 GATA2 FOXK2 SMARCE1 RNF2 CEBPB LOC105378024 LOC105378023
GH06G139532 1.5 FANTOM5 Ensembl ENCODE 0.4 -12.2 -12182 2.3 HDGF PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 FOS NCOA1 MEF2D HECA CITED2 LOC105378023 LOC105378024
GH06G139530 1.4 FANTOM5 Ensembl ENCODE 0.4 -14.9 -14922 1.7 PKNOX1 CBX3 MAX ZNF644 RAD21 YY1 FOSL1 CTBP1 ARID3A ADNP HECA LOC105378023 LOC105378024
GH06G139538 1.3 FANTOM5 Ensembl ENCODE 0.4 -6.4 -6421 3.1 TEAD1 JUN NFYC MAX CEBPB CEBPG ZNF644 ATF2 TEAD3 JUND CITED2 HECA LOC105378024 LOC105378023
GH06G139546 0.7 Ensembl ENCODE 0.7 +1.1 1064 1.4 FOXM1 IKZF1 KAT8 LOC105378024 ATP5F1P6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105378024 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105378024 Gene

Chromosome:
6
Start:
139,546,271 bp from pter
End:
139,547,690 bp from pter
Size:
1,420 bases
Orientation:
Plus strand

Genomic View for LOC105378024 Gene

Genes around LOC105378024 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378024 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378024 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378024 Gene

Proteins for LOC105378024 Gene

Post-translational modifications for LOC105378024 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378024 Gene

Domains & Families for LOC105378024 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378024 Gene

Function for LOC105378024 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378024 Gene

Localization for LOC105378024 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105378024 Gene

Pathways & Interactions for LOC105378024 Gene

SuperPathways for LOC105378024 Gene

No Data Available

Interacting Proteins for LOC105378024 Gene

Gene Ontology (GO) - Biological Process for LOC105378024 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378024 Gene

Drugs & Compounds for LOC105378024 Gene

No Compound Related Data Available

Transcripts for LOC105378024 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378024 Gene

No ASD Table

Relevant External Links for LOC105378024 Gene

GeneLoc Exon Structure for
LOC105378024

No data available for mRNA/cDNA for LOC105378024 Gene

Expression for LOC105378024 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378024 Gene

Orthologs for LOC105378024 Gene

No data available for Orthologs and Evolution for LOC105378024 Gene

Paralogs for LOC105378024 Gene

No data available for Paralogs for LOC105378024 Gene

Variants for LOC105378024 Gene

Sequence variations from dbSNP and Humsavar for LOC105378024 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000532043 -- 139,546,736(+) ACAAG(A/G)GACTA intron-variant
rs1000817742 -- 139,544,994(+) GCATC(A/T)TAGGT nc-transcript-variant
rs1000885809 -- 139,545,257(+) CTAGA(A/T)CCCTT nc-transcript-variant
rs1001309242 -- 139,543,212(+) TTGGA(A/G)GGCCC upstream-variant-2KB
rs1001729081 -- 139,544,284(+) TTTTC(C/T)TTTTC upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105378024 Gene

Disorders for LOC105378024 Gene

No disorders were found for LOC105378024 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378024 Gene

Publications for LOC105378024 Gene

No publications were found for LOC105378024 Gene.

Products for LOC105378024 Gene

Sources for LOC105378024 Gene

Content
Loading form....