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Aliases for LOC105377623 Gene

Subcategory (RNA class) for LOC105377623 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105377623 Gene

  • Uncharacterized LOC105377623 3
  • RP11-284M14.1 5

External Ids for LOC105377623 Gene

Previous GeneCards Identifiers for LOC105377623 Gene

  • GC04U902136

Summaries for LOC105377623 Gene

GeneCards Summary for LOC105377623 Gene

LOC105377623 (Uncharacterized LOC105377623) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105377623 Gene

Genomics for LOC105377623 Gene

Regulatory Elements for LOC105377623 Gene

Enhancers for LOC105377623 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G143389 1 Ensembl dbSUPER 10.6 -204.6 -204604 0.2 SOX13 FOXA2 SAP130 GATA3 RERE FOS ZNF600 CREM TCF7L2 MIXL1 GAB1 LOC105377623 USP38 RPSAP36 RPS2P20
GH04G143478 0.8 dbSUPER 10.8 -296.0 -295954 5.0 CTCF NFIB ZNF384 RAD21 CTBP1 ZNF366 ZSCAN5C SMC3 FOSL2 FOS GAB1 LOC105377623 USP38 LOC101927636 ENSG00000250540 RPSAP36
GH04G143416 0.8 dbSUPER 9.9 -235.4 -235360 8.5 TBP PKNOX1 TBL1XR1 BMI1 FOS RELB IKZF2 CREM GATAD2B TBX21 GAB1 USP38 LOC105377623 RPSAP36 RPS2P20
GH04G143472 0.7 dbSUPER 11.2 -290.4 -290370 5.7 PKNOX1 FOXA2 HCFC1 MAX RAD21 YY1 FOXA1 JUND ATF3 ZNF143 USP38 LOC105377623 GAB1 LOC100420464 ENSG00000250540 RPSAP36
GH04G143452 0.7 dbSUPER 11.2 -269.0 -269038 3.7 PKNOX1 ESRRA BACH1 BMI1 GATA2 FOXK2 MAFK RFX1 MTA2 USF2 GAB1 LOC105377623 USP38 LOC100420464 RPSAP36 ENSG00000250540
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105377623 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105377623 Gene

Chromosome:
4
Start:
142,933,195 bp from pter
End:
143,185,297 bp from pter
Size:
252,103 bases
Orientation:
Minus strand

Genomic View for LOC105377623 Gene

Genes around LOC105377623 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105377623 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105377623 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105377623 Gene

Proteins for LOC105377623 Gene

Post-translational modifications for LOC105377623 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105377623 Gene

Domains & Families for LOC105377623 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105377623 Gene

Function for LOC105377623 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105377623 Gene

Localization for LOC105377623 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105377623 Gene

Pathways & Interactions for LOC105377623 Gene

SuperPathways for LOC105377623 Gene

No Data Available

Interacting Proteins for LOC105377623 Gene

Gene Ontology (GO) - Biological Process for LOC105377623 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105377623 Gene

Drugs & Compounds for LOC105377623 Gene

No Compound Related Data Available

Transcripts for LOC105377623 Gene

mRNA/cDNA for LOC105377623 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105377623 Gene

No ASD Table

Relevant External Links for LOC105377623 Gene

GeneLoc Exon Structure for
LOC105377623

Expression for LOC105377623 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105377623 Gene

Orthologs for LOC105377623 Gene

Evolution for LOC105377623 Gene

ENSEMBL:
Gene Tree for LOC105377623 (if available)
TreeFam:
Gene Tree for LOC105377623 (if available)

No data available for Orthologs for LOC105377623 Gene

Paralogs for LOC105377623 Gene

No data available for Paralogs for LOC105377623 Gene

Variants for LOC105377623 Gene

Sequence variations from dbSNP and Humsavar for LOC105377623 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000148899 -- 143,184,691(+) ACACT(C/G)TCCAG nc-transcript-variant, upstream-variant-2KB
rs1000578612 -- 143,185,370(+) CTCCG(C/T)CCCGG upstream-variant-2KB, utr-variant-5-prime
rs1000823819 -- 143,180,479(+) TTATA(G/T)AATTT intron-variant
rs1001009324 -- 143,180,243(+) TTTGT(C/T)CTTAG intron-variant
rs1001059915 -- 143,186,697(+) AAGAG(C/T)ACGAG intron-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105377623 Gene

Disorders for LOC105377623 Gene

Relevant External Links for LOC105377623

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC105377623

No disorders were found for LOC105377623 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105377623 Gene

Publications for LOC105377623 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for LOC105377623 Gene

Sources for LOC105377623 Gene

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