Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105377623 Gene

Subcategory (RNA class) for LOC105377623 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105377623 Gene

  • Uncharacterized LOC105377623 3
  • AC104596.1 5

External Ids for LOC105377623 Gene

Previous GeneCards Identifiers for LOC105377623 Gene

  • GC04U902136

Summaries for LOC105377623 Gene

GeneCards Summary for LOC105377623 Gene

LOC105377623 (Uncharacterized LOC105377623) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105377623 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105377623 Gene

Genomics for LOC105377623 Gene

GeneHancer (GH) Regulatory Elements for LOC105377623 Gene

Promoters and enhancers for LOC105377623 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I143183 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 554.6 -1.5 -1492 6.8 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 USP38 LOC105377623 ENSG00000250969
GH04I143389 Enhancer 0.9 Ensembl dbSUPER 10.6 -204.6 -204604 0.2 SOX13 FOXA2 SAP130 GATA3 RERE FOS ZNF600 CREM TCF7L2 MIXL1 GAB1 LOC105377623 USP38 RPSAP36 RPS2P20
GH04I143416 Enhancer 0.7 dbSUPER 9.9 -235.4 -235359 8.5 PKNOX1 BACH1 ZNF384 EBF1 BMI1 RELA ATF7 ZSCAN29 IKZF2 RUNX3 GAB1 LOC105377623 USP38 RPSAP36 RPS2P20
GH04I143472 Enhancer 0.6 dbSUPER 11.2 -290.4 -290369 5.7 PKNOX1 FOXA2 RXRA MAX REST ELF1 RAD21 YY1 JUND ATF3 USP38 LOC105377623 GAB1 LOC100420464 ENSG00000250540 RPSAP36
GH04I143478 Enhancer 0.6 dbSUPER 10.9 -296.0 -295954 5 CTCF ZNF654 TRIM22 ZNF384 REST RAD21 MITF SMC3 ZNF143 GAB1 USP38 LOC105377623 LOC101927636 ENSG00000250540 RPSAP36
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105377623 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105377623 Gene

Genomic Locations for LOC105377623 Gene
chr4:142,933,195-143,185,297
(GRCh38/hg38)
Size:
252,103 bases
Orientation:
Minus strand
chr4:143,854,348-144,106,014
(GRCh37/hg19)

Genomic View for LOC105377623 Gene

Genes around LOC105377623 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105377623 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105377623 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105377623 Gene

Proteins for LOC105377623 Gene

Post-translational modifications for LOC105377623 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105377623 Gene

Domains & Families for LOC105377623 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105377623 Gene

Function for LOC105377623 Gene

Phenotypes From GWAS Catalog for LOC105377623 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105377623 Gene

Localization for LOC105377623 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105377623 Gene

Pathways & Interactions for LOC105377623 Gene

SuperPathways for LOC105377623 Gene

No Data Available

Interacting Proteins for LOC105377623 Gene

Gene Ontology (GO) - Biological Process for LOC105377623 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105377623 Gene

Drugs & Compounds for LOC105377623 Gene

No Compound Related Data Available

Transcripts for LOC105377623 Gene

mRNA/cDNA for LOC105377623 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105377623 Gene

No ASD Table

Relevant External Links for LOC105377623 Gene

GeneLoc Exon Structure for
LOC105377623

Expression for LOC105377623 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105377623 Gene

Orthologs for LOC105377623 Gene

Evolution for LOC105377623 Gene

ENSEMBL:
Gene Tree for LOC105377623 (if available)
TreeFam:
Gene Tree for LOC105377623 (if available)

No data available for Orthologs for LOC105377623 Gene

Paralogs for LOC105377623 Gene

No data available for Paralogs for LOC105377623 Gene

Variants for LOC105377623 Gene

Sequence variations from dbSNP and Humsavar for LOC105377623 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000148899 -- 143,184,691(-) C/G non_coding_transcript_variant
rs1000578612 -- 143,185,370(-) C/T upstream_transcript_variant
rs1000823819 -- 143,180,479(-) G/T intron_variant
rs1001009324 -- 143,180,243(-) T/C intron_variant
rs1001059915 -- 143,186,697(-) T/C upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105377623 Gene

Disorders for LOC105377623 Gene

Additional Disease Information for LOC105377623

No disorders were found for LOC105377623 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105377623 Gene

Publications for LOC105377623 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LOC105377623 Gene

Sources for LOC105377623 Gene

Content
Loading form....