Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105377577 Gene

Subcategory (RNA class) for LOC105377577 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105377577 Gene

  • Uncharacterized LOC105377577 3

External Ids for LOC105377577 Gene

Previous GeneCards Identifiers for LOC105377577 Gene

  • GC04U902268

Summaries for LOC105377577 Gene

GeneCards Summary for LOC105377577 Gene

LOC105377577 (Uncharacterized LOC105377577) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105377577 Gene

Genomics for LOC105377577 Gene

Regulatory Elements for LOC105377577 Gene

Enhancers for LOC105377577 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G182938 0.9 ENCODE 0.7 +0.8 760 0.2 ELF3 CBX3 RB1 WRNIP1 ARID4B ZNF48 RAD21 ZNF143 ZNF654 REST LOC105377577 GC04P182952
GH04G182922 0.9 Ensembl ENCODE 0.4 -14.1 -14105 2.8 FOXA2 RFX1 BHLHE40 SCRT2 HMBOX1 FOS MYC ATF2 NR2F2 DCTD LOC105377577
GH04G182925 0.9 ENCODE 0.4 -12.0 -12041 0.2 HDAC1 CBX3 RB1 ARID4B FEZF1 DNMT3B ZNF2 ZNF48 RAD21 YY1 RNU6-1053P CDKN2AIP DCTD LOC105377577
GH04G182928 0.7 ENCODE 0.4 -7.9 -7884 2.8 CTCF FOXA2 BHLHE40 MNT YBX1 IRF9 JUND ZNF366 FOS MAFK DCTD LOC105377577
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105377577 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105377577 Gene

Chromosome:
4
Start:
182,937,523 bp from pter
End:
182,943,279 bp from pter
Size:
5,757 bases
Orientation:
Plus strand

Genomic View for LOC105377577 Gene

Genes around LOC105377577 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105377577 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105377577 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105377577 Gene

Proteins for LOC105377577 Gene

Post-translational modifications for LOC105377577 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105377577 Gene

Domains & Families for LOC105377577 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105377577 Gene

Function for LOC105377577 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105377577 Gene

Localization for LOC105377577 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105377577 Gene

Pathways & Interactions for LOC105377577 Gene

SuperPathways for LOC105377577 Gene

No Data Available

Interacting Proteins for LOC105377577 Gene

Gene Ontology (GO) - Biological Process for LOC105377577 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105377577 Gene

Drugs & Compounds for LOC105377577 Gene

No Compound Related Data Available

Transcripts for LOC105377577 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105377577 Gene

No ASD Table

Relevant External Links for LOC105377577 Gene

GeneLoc Exon Structure for
LOC105377577

No data available for mRNA/cDNA for LOC105377577 Gene

Expression for LOC105377577 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105377577 Gene

Orthologs for LOC105377577 Gene

No data available for Orthologs and Evolution for LOC105377577 Gene

Paralogs for LOC105377577 Gene

No data available for Paralogs for LOC105377577 Gene

Variants for LOC105377577 Gene

Sequence variations from dbSNP and Humsavar for LOC105377577 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000231490 -- 182,941,711(+) ACCAA(C/G)AGGTG intron-variant
rs1000472597 -- 182,935,583(+) CTAGT(G/T)CAACC upstream-variant-2KB
rs10004978 -- 182,938,897(+) TTTtt(C/T)ctttt intron-variant
rs1000977441 -- 182,937,749(+) GGTAA(A/G)GTATC intron-variant
rs1001011546 -- 182,937,440(+) TTAAG(A/G)CTAAT nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105377577 Gene

Disorders for LOC105377577 Gene

No disorders were found for LOC105377577 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105377577 Gene

Publications for LOC105377577 Gene

No publications were found for LOC105377577 Gene.

Products for LOC105377577 Gene

Sources for LOC105377577 Gene

Content
Loading form....