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Aliases for LOC105376580 Gene

Subcategory (RNA class) for LOC105376580 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105376580 Gene

  • Uncharacterized LOC105376580 3
  • RP11-428C19.5 5

External Ids for LOC105376580 Gene

Previous GeneCards Identifiers for LOC105376580 Gene

  • GC11U902674

Summaries for LOC105376580 Gene

GeneCards Summary for LOC105376580 Gene

LOC105376580 (Uncharacterized LOC105376580) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105376580 Gene

Genomics for LOC105376580 Gene

Regulatory Elements for LOC105376580 Gene

Enhancers for LOC105376580 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G019236 1.6 Ensembl ENCODE dbSUPER 6.8 -56.5 -56454 9.1 PKNOX1 ARID4B SIN3A DMAP1 YY1 FOS SP3 SP5 ZHX2 NFYC ZDHHC13 ENSG00000256361 LOC105376580 E2F8 CSRP3
GH11G019276 0.8 ENCODE 6 -19.8 -19791 2.6 GTF2F1 ESRRA JUN MAX CEBPG CTBP1 GATA3 FOS RCOR1 CHD2 NAV2 LOC105376580 PCNAP4
GH11G019260 0.7 Ensembl 5.8 -37.1 -37074 0.2 CTCF ZNF654 TBL1XR1 TRIM22 REST RAD21 MAFF JUND ZNF316 MYNN LOC105376580 PCNAP4 E2F8
GH11G019228 0.8 ENCODE dbSUPER 4.7 -67.5 -67517 2.5 BCOR POLR2A ZMYM3 KDM1A LOC105376580 E2F8 CSRP3
GH11G019281 0.6 ENCODE 0.4 -16.1 -16056 0.2 PKNOX1 RAD51 ARID3A MTA2 NFYB TBX21 PCNAP4 LOC105376580
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105376580 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105376580 Gene

Chromosome:
11
Start:
19,297,174 bp from pter
End:
19,310,713 bp from pter
Size:
13,540 bases
Orientation:
Plus strand

Genomic View for LOC105376580 Gene

Genes around LOC105376580 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376580 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376580 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376580 Gene

Proteins for LOC105376580 Gene

Post-translational modifications for LOC105376580 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376580 Gene

Domains & Families for LOC105376580 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105376580 Gene

Function for LOC105376580 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376580 Gene

Localization for LOC105376580 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105376580 Gene

Pathways & Interactions for LOC105376580 Gene

SuperPathways for LOC105376580 Gene

No Data Available

Interacting Proteins for LOC105376580 Gene

Gene Ontology (GO) - Biological Process for LOC105376580 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376580 Gene

Drugs & Compounds for LOC105376580 Gene

No Compound Related Data Available

Transcripts for LOC105376580 Gene

mRNA/cDNA for LOC105376580 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376580 Gene

No ASD Table

Relevant External Links for LOC105376580 Gene

GeneLoc Exon Structure for
LOC105376580

Expression for LOC105376580 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376580 Gene

Orthologs for LOC105376580 Gene

Evolution for LOC105376580 Gene

ENSEMBL:
Gene Tree for LOC105376580 (if available)
TreeFam:
Gene Tree for LOC105376580 (if available)

No data available for Orthologs for LOC105376580 Gene

Paralogs for LOC105376580 Gene

No data available for Paralogs for LOC105376580 Gene

Variants for LOC105376580 Gene

Sequence variations from dbSNP and Humsavar for LOC105376580 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs59444364 Likely benign 19,210,584(+) CCGCC(C/T)CCCAG intron-variant, upstream-variant-2KB
rs112672382 Uncertain significance 19,210,495(+) TCTCT(C/T)TTTTT intron-variant, utr-variant-5-prime
rs138573509 Uncertain significance 19,210,493(+) TCTCT(-/C)TTTTT intron-variant, utr-variant-5-prime
rs45498797 Uncertain significance 19,201,999(-) GGACA(A/C)GAGCC intron-variant, utr-variant-5-prime
rs569978006 Uncertain significance 19,210,527(+) TCTGG(C/T)TCTGT intron-variant, utr-variant-5-prime

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105376580 Gene

Disorders for LOC105376580 Gene

No disorders were found for LOC105376580 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376580 Gene

Publications for LOC105376580 Gene

No publications were found for LOC105376580 Gene.

Products for LOC105376580 Gene

Sources for LOC105376580 Gene

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