Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105376223 Gene

Subcategory (RNA class) for LOC105376223 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105376223 Gene

  • Uncharacterized LOC105376223 3
  • AL157702.2 5

External Ids for LOC105376223 Gene

Previous GeneCards Identifiers for LOC105376223 Gene

  • GC09U902280
  • GC09P113757
  • GC09P113759
  • GC09P113764
  • GC09P113766
  • GC09P113869

Summaries for LOC105376223 Gene

GeneCards Summary for LOC105376223 Gene

LOC105376223 (Uncharacterized LOC105376223) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376223 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105376223 Gene

Genomics for LOC105376223 Gene

Regulatory Elements for LOC105376223 Gene

Enhancers for LOC105376223 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H113150 1.7 FANTOM5 ENCODE dbSUPER 5.8 -494.4 -494411 6 PKNOX1 ATF1 ZFP64 ARID4B SIN3A BRCA1 ETS1 ZNF121 GLIS2 CBX5 PRPF4 SLC31A2 ZNF618 COL27A1 FKBP15 BSPRY LOC105376223 WDR31 SNX30 RGS3
GH09H113647 1.5 Ensembl ENCODE dbSUPER 0.7 +1.7 1710 3 FOXA2 MLX ARID4B DMAP1 ZNF143 MXD4 NFYC MIER2 PPARG KAT8 RGS3 C9orf43 POLE3 ALAD RNF183 PRPF4 CDC26 LOC105376223 LOC100288542
GH09H113652 1 dbSUPER 0.7 +5.0 4985 0 FOXA2 ATF1 MLX ARID4B DMAP1 YY1 ZNF121 SLC30A9 ATF7 SP5 RGS3 RNF183 C9orf43 POLE3 KIF12 LOC105376223 LOC100288542
GH09H113654 1.1 Ensembl ENCODE 0.4 +7.2 7244 2 ELF3 NFIB ARID4B RAD21 ZNF143 ZNF654 GATAD2B ELF1 REST ZNF623 LOC105376221 RGS3 POLE3 C9orf43 CDC26 PRPF4 RNF183 LOC105376223 LOC100288542
GH09H113657 1.1 Ensembl ENCODE 0.4 +10.2 10207 0 ATF1 RB1 ZSCAN4 ARID4B SIN3A ZNF2 RAD21 ZNF143 ATF7 CREM RGS3 ALAD RNF183 TMEM268 KIF12 LOC105376223 LOC100288542
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105376223 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105376223 Gene

Chromosome:
9
Start:
113,647,895 bp from pter
End:
113,682,855 bp from pter
Size:
34,961 bases
Orientation:
Plus strand

Genomic View for LOC105376223 Gene

Genes around LOC105376223 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376223 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376223 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376223 Gene

Proteins for LOC105376223 Gene

Post-translational modifications for LOC105376223 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376223 Gene

Domains & Families for LOC105376223 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105376223 Gene

Function for LOC105376223 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376223 Gene

Localization for LOC105376223 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376223 Gene

Pathways & Interactions for LOC105376223 Gene

SuperPathways for LOC105376223 Gene

No Data Available

Interacting Proteins for LOC105376223 Gene

Gene Ontology (GO) - Biological Process for LOC105376223 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376223 Gene

Drugs & Compounds for LOC105376223 Gene

No Compound Related Data Available

Transcripts for LOC105376223 Gene

mRNA/cDNA for LOC105376223 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376223 Gene

No ASD Table

Relevant External Links for LOC105376223 Gene

GeneLoc Exon Structure for
LOC105376223

Expression for LOC105376223 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376223 Gene

Orthologs for LOC105376223 Gene

Evolution for LOC105376223 Gene

ENSEMBL:
Gene Tree for LOC105376223 (if available)
TreeFam:
Gene Tree for LOC105376223 (if available)

No data available for Orthologs for LOC105376223 Gene

Paralogs for LOC105376223 Gene

No data available for Paralogs for LOC105376223 Gene

Variants for LOC105376223 Gene

Sequence variations from dbSNP and Humsavar for LOC105376223 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000074358 -- 113,674,954(+) CCCAA(C/G)AAAAG intron-variant
rs1000318708 -- 113,663,018(+) GGAAC(A/C)TATAA intron-variant
rs1000400915 -- 113,668,846(+) GAATG(A/C)CCCTG intron-variant
rs1000433106 -- 113,652,002(+) CTCTG(C/T)TCACT intron-variant
rs1000438704 -- 113,669,077(+) TCCTT(C/T)CTTCC intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105376223 Gene

Disorders for LOC105376223 Gene

No disorders were found for LOC105376223 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376223 Gene

Publications for LOC105376223 Gene

No publications were found for LOC105376223 Gene.

Products for LOC105376223 Gene

Sources for LOC105376223 Gene

Content
Loading form....