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Aliases for LOC105376220 Gene

Subcategory (RNA class) for LOC105376220 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105376220 Gene

  • Uncharacterized LOC105376220 3

External Ids for LOC105376220 Gene

Previous GeneCards Identifiers for LOC105376220 Gene

  • GC09U902586

Summaries for LOC105376220 Gene

GeneCards Summary for LOC105376220 Gene

LOC105376220 (Uncharacterized LOC105376220) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376220 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105376220 Gene

Genomics for LOC105376220 Gene

Regulatory Elements for LOC105376220 Gene

Enhancers for LOC105376220 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H112027 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.2 -2241 11 HDGF PKNOX1 FOXA2 NSD2 SIN3A YBX1 YY1 GATA2 ZNF207 FOS RNU6-710P RNU6-1013P ENSG00000259953 DNAJC25 ENSG00000227531 LOC105376220
GH09H112010 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +19.0 18990 4 PKNOX1 FOXA2 SIN3A ZBTB7B ZNF143 ZNF207 FOS ATF7 RUNX3 JUNB ENSG00000259953 SUSD1 UGCG RNU6-710P LOC105376220
GH09H112020 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +9.9 9924 2 ELF3 HDGF PKNOX1 BMI1 BATF RAD21 YY1 FOS ATF7 ETV6 ENSG00000224067 C9orf84 ENSG00000259953 LOC105376220 RNU6-710P
GH09H112026 0.5 ENCODE dbSUPER 0.7 +4.6 4600 0 RNU6-1013P LOC105376220 RNU6-710P
GH09H112001 1 Ensembl ENCODE dbSUPER 0.3 +28.4 28408 1 ZSCAN5C NR2F1 RUNX3 NR2F2 SETDB1 RNU6-1013P RNU6-710P LOC105376220
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105376220 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105376220 Gene

Chromosome:
9
Start:
112,028,538 bp from pter
End:
112,031,297 bp from pter
Size:
2,760 bases
Orientation:
Minus strand

Genomic View for LOC105376220 Gene

Genes around LOC105376220 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376220 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376220 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376220 Gene

Proteins for LOC105376220 Gene

Post-translational modifications for LOC105376220 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376220 Gene

Domains & Families for LOC105376220 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105376220 Gene

Function for LOC105376220 Gene

Phenotypes From GWAS Catalog for LOC105376220 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376220 Gene

Localization for LOC105376220 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376220 Gene

Pathways & Interactions for LOC105376220 Gene

SuperPathways for LOC105376220 Gene

No Data Available

Interacting Proteins for LOC105376220 Gene

Gene Ontology (GO) - Biological Process for LOC105376220 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376220 Gene

Drugs & Compounds for LOC105376220 Gene

No Compound Related Data Available

Transcripts for LOC105376220 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376220 Gene

No ASD Table

Relevant External Links for LOC105376220 Gene

GeneLoc Exon Structure for
LOC105376220

No data available for mRNA/cDNA for LOC105376220 Gene

Expression for LOC105376220 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376220 Gene

Orthologs for LOC105376220 Gene

No data available for Orthologs and Evolution for LOC105376220 Gene

Paralogs for LOC105376220 Gene

No data available for Paralogs for LOC105376220 Gene

Variants for LOC105376220 Gene

Sequence variations from dbSNP and Humsavar for LOC105376220 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000002992 -- 112,035,174(+) GACCA(C/T)ACTCA intron-variant
rs1000440587 -- 112,031,326(+) AATAT(C/T)TTTAA intron-variant
rs1000536331 -- 112,030,936(+) CCCGG(A/G)AGGTG intron-variant
rs1000635317 -- 112,026,367(+) CTCTC(C/G)CTCCT nc-transcript-variant
rs1001388936 -- 112,038,773(+) GGGCT(A/G)GTCTT nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105376220 Gene

Disorders for LOC105376220 Gene

No disorders were found for LOC105376220 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376220 Gene

Publications for LOC105376220 Gene

No publications were found for LOC105376220 Gene.

Products for LOC105376220 Gene

Sources for LOC105376220 Gene

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