Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105375253 Gene

Subcategory (RNA class) for LOC105375253 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105375253 Gene

  • Uncharacterized LOC105375253 3

External Ids for LOC105375253 Gene

Previous GeneCards Identifiers for LOC105375253 Gene

  • GC07U903927

Summaries for LOC105375253 Gene

GeneCards Summary for LOC105375253 Gene

LOC105375253 (Uncharacterized LOC105375253) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375253 Gene

Genomics for LOC105375253 Gene

Regulatory Elements for LOC105375253 Gene

Enhancers for LOC105375253 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G042945 1.1 Ensembl ENCODE 0.4 +10.0 10023 1.1 HDAC1 HDGF PKNOX1 ATF1 NFRKB CHAMP1 TCF12 EGR1 RELB IKZF2 C7orf25 HECW1 ENSG00000228680 PSMA2 LOC105375253
GH07G042940 1 Ensembl ENCODE 0.4 +14.7 14747 0.9 CTCF MXI1 CBX3 WRNIP1 MAX ZNF2 RAD21 SCRT2 ZNF143 SMC3 C7orf25 MRPL32 PSMA2 LOC105375253
GH07G042972 1 Ensembl ENCODE 0.4 -17.3 -17253 1.8 BCOR ESRRA ZNF146 ZMYM3 CHAMP1 ZNF664 GATA2 NFYB ZNF143 FOS C7orf25 LOC105375253 GC07P043096
GH07G042964 0.8 ENCODE 0.4 -8.8 -8844 0.7 HDGF BCOR LEF1 NFRKB ETV1 TAL1 EBF1 CHAMP1 TCF12 NCOR1 LOC105375253 GC07P043096
GH07G043037 0.8 ENCODE 0.2 -82.0 -82031 1.6 HDGF ESRRA CBX3 ZBTB40 FOSL1 ZNF316 POLR2A ZSCAN29 TRIM24 MAFK LOC105375254 GC07P043096 LOC105375253
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105375253 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105375253 Gene

Chromosome:
7
Start:
42,953,227 bp from pter
End:
42,956,129 bp from pter
Size:
2,903 bases
Orientation:
Minus strand

Genomic View for LOC105375253 Gene

Genes around LOC105375253 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375253 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375253 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375253 Gene

Proteins for LOC105375253 Gene

Post-translational modifications for LOC105375253 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375253 Gene

Domains & Families for LOC105375253 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375253 Gene

Function for LOC105375253 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375253 Gene

Localization for LOC105375253 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105375253 Gene

Pathways & Interactions for LOC105375253 Gene

SuperPathways for LOC105375253 Gene

No Data Available

Interacting Proteins for LOC105375253 Gene

Gene Ontology (GO) - Biological Process for LOC105375253 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375253 Gene

Drugs & Compounds for LOC105375253 Gene

No Compound Related Data Available

Transcripts for LOC105375253 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375253 Gene

No ASD Table

Relevant External Links for LOC105375253 Gene

GeneLoc Exon Structure for
LOC105375253

No data available for mRNA/cDNA for LOC105375253 Gene

Expression for LOC105375253 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375253 Gene

Orthologs for LOC105375253 Gene

No data available for Orthologs and Evolution for LOC105375253 Gene

Paralogs for LOC105375253 Gene

No data available for Paralogs for LOC105375253 Gene

Variants for LOC105375253 Gene

Sequence variations from dbSNP and Humsavar for LOC105375253 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000488587 -- 42,950,501(+) GTCCC(C/T)ACCCA downstream-variant-500B
rs1000822939 -- 42,957,713(+) TTCAC(C/T)TTTGT upstream-variant-2KB
rs1000943294 -- 42,950,436(+) GAAAA(A/T)CTTCA downstream-variant-500B
rs1001202299 -- 42,953,872(+) CCATG(C/T)TTCCC nc-transcript-variant
rs1001225570 -- 42,951,897(+) TCCAT(-/A)AAAAA nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105375253 Gene

Disorders for LOC105375253 Gene

No disorders were found for LOC105375253 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375253 Gene

Publications for LOC105375253 Gene

No publications were found for LOC105375253 Gene.

Products for LOC105375253 Gene

Sources for LOC105375253 Gene

Content
Loading form....