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Aliases for LOC105374353 Gene

Subcategory (RNA class) for LOC105374353 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105374353 Gene

  • Uncharacterized LOC105374353 3
  • AL645924.1 5

External Ids for LOC105374353 Gene

Previous GeneCards Identifiers for LOC105374353 Gene

  • GC04U902269

Summaries for LOC105374353 Gene

GeneCards Summary for LOC105374353 Gene

LOC105374353 (Uncharacterized LOC105374353) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374353 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374353 Gene

Genomics for LOC105374353 Gene

Regulatory Elements for LOC105374353 Gene

Enhancers for LOC105374353 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H002401 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -60.6 -60614 1 HDAC1 PKNOX1 SIN3A EGR1 KLF7 ATF7 EGR2 SP3 SP5 NR2F2 ZFYVE28 RNF4 LOC105374353 ENSG00000251148 MXD4 HAUS3 POLN NELFA C4orf48 GC04P002406
GH04H002481 1.3 Ensembl ENCODE dbSUPER 13 +21.4 21409 5 HDGF PKNOX1 SIN3A BATF ATF7 ETV6 RUNX3 CREM IKZF2 EGR2 RNF4 ZFYVE28 TNIP2 LOC105374353 MXD4 HAUS3 POLN ENSG00000251148 SH3BP2 GC04P002484
GH04H002489 1.3 Ensembl ENCODE dbSUPER 12.3 +27.1 27093 1 BACH1 ZNF175 CEBPG ZNF766 GATA3 ZNF600 ZNF584 TRIM24 ZNF197 E2F5 RNF4 HAUS3 NELFA FAM193A ENSG00000270195 LOC105374353 ZFYVE28 ENSG00000251148 MXD4 POLN
GH04H002393 1.3 Ensembl ENCODE dbSUPER 11 -69.2 -69190 0 HDAC1 ATF1 SAP130 ETV1 RELA CTBP1 CBX5 ELK1 FOXK2 POLR2A ZFYVE28 ENSG00000251148 MXD4 HAUS3 POLN RNF4 LOC105374353 C4orf48 NELFA PIR44270
GH04H002361 1.2 FANTOM5 ENCODE 11.3 -99.6 -99564 4 HDAC1 TBP FOXA2 PKNOX1 ATF1 RB1 RAD21 YY1 EGR1 CREM ZFYVE28 ENSG00000251148 MXD4 CFAP99 LOC105374353 RNF4 HAUS3 POLN NELFA C4orf48
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105374353 on UCSC Golden Path with GeneCards custom track

Promoters for LOC105374353 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000164960 -314 1001 ELF3 RB1 SIN3A RAD21 ZNF121 ZNF143 THAP11 SMARCA5 REST ZNF592

Genomic Location for LOC105374353 Gene

Chromosome:
4
Start:
2,463,014 bp from pter
End:
2,466,198 bp from pter
Size:
3,185 bases
Orientation:
Plus strand

Genomic View for LOC105374353 Gene

Genes around LOC105374353 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374353 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374353 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374353 Gene

Proteins for LOC105374353 Gene

Post-translational modifications for LOC105374353 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374353 Gene

Domains & Families for LOC105374353 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374353 Gene

Function for LOC105374353 Gene

Phenotypes From GWAS Catalog for LOC105374353 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374353 Gene

Localization for LOC105374353 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374353 Gene

Pathways & Interactions for LOC105374353 Gene

SuperPathways for LOC105374353 Gene

No Data Available

Interacting Proteins for LOC105374353 Gene

Gene Ontology (GO) - Biological Process for LOC105374353 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374353 Gene

Drugs & Compounds for LOC105374353 Gene

No Compound Related Data Available

Transcripts for LOC105374353 Gene

mRNA/cDNA for LOC105374353 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374353 Gene

No ASD Table

Relevant External Links for LOC105374353 Gene

GeneLoc Exon Structure for
LOC105374353

Expression for LOC105374353 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374353 Gene

Orthologs for LOC105374353 Gene

Evolution for LOC105374353 Gene

ENSEMBL:
Gene Tree for LOC105374353 (if available)
TreeFam:
Gene Tree for LOC105374353 (if available)

No data available for Orthologs for LOC105374353 Gene

Paralogs for LOC105374353 Gene

No data available for Paralogs for LOC105374353 Gene

Variants for LOC105374353 Gene

Sequence variations from dbSNP and Humsavar for LOC105374353 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000059398 -- 2,462,413(+) CGGCC(G/T)GCTCC intron-variant, upstream-variant-2KB
rs1000111453 -- 2,462,198(+) AAAAG(A/G)AAAAA intron-variant, upstream-variant-2KB
rs1000349463 -- 2,466,645(+) TTATT(A/C/G)TTTGT intron-variant, downstream-variant-500B
rs1000384196 -- 2,466,186(+) GTGAC(A/G)TGATG intron-variant, nc-transcript-variant
rs1000711906 -- 2,461,883(+) GGGTA(C/T)CTCCA intron-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105374353 Gene

Disorders for LOC105374353 Gene

No disorders were found for LOC105374353 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374353 Gene

Publications for LOC105374353 Gene

No publications were found for LOC105374353 Gene.

Products for LOC105374353 Gene

Sources for LOC105374353 Gene

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