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Aliases for LOC105373942 Gene

Subcategory (RNA class) for LOC105373942 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105373942 Gene

  • Uncharacterized LOC105373942 3
  • AC064874.1 5

External Ids for LOC105373942 Gene

Previous GeneCards Identifiers for LOC105373942 Gene

  • GC02U903264

Summaries for LOC105373942 Gene

GeneCards Summary for LOC105373942 Gene

LOC105373942 (Uncharacterized LOC105373942) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105373942 Gene

Genomics for LOC105373942 Gene

Regulatory Elements for LOC105373942 Gene

Enhancers for LOC105373942 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G236173 0.9 ENCODE dbSUPER 11.4 -384.7 -384663 2.3 RNF2 SUZ12 CBX2 MAX ZIC2 ZBTB7A ZFHX2 EGR1 GLIS1 ZNF652 LOC105373942 ASB18 GBX2 RNU1-31P GC02M236211
GH02G235746 0.9 ENCODE dbSUPER 11 +44.0 43973 0.2 ZNF263 CTCF ZNF654 TRIM22 ARID4B ZNF384 REST RAD21 MBD1 SMC3 LOC105373942 PIR31689 PIR48898
GH02G235747 0.9 ENCODE dbSUPER 11 +41.9 41901 2.9 GTF2F1 TBP ZNF680 KLF1 MXI1 BHLHE40 MAX CEBPB KLF17 EP300 LOC105373942 AGAP1 PIR48898 PIR31689
GH02G235756 0.4 dbSUPER 11.7 +32.8 32825 1.4 SMARCA4 LOC105373942 AGAP1 PIR31730 GC02P235753
GH02G235765 1.2 Ensembl ENCODE dbSUPER 0.3 +24.3 24329 1.5 GATAD2A CTCF ZNF654 RFX1 TRIM22 RAD21 TEAD3 FOSL1 JUND MBD1 PIR31730 GC02P235753 LOC105373942
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105373942 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105373942 Gene

Chromosome:
2
Start:
235,746,385 bp from pter
End:
235,790,474 bp from pter
Size:
44,090 bases
Orientation:
Minus strand

Genomic View for LOC105373942 Gene

Genes around LOC105373942 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105373942 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105373942 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105373942 Gene

Proteins for LOC105373942 Gene

Post-translational modifications for LOC105373942 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105373942 Gene

Domains & Families for LOC105373942 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105373942 Gene

Function for LOC105373942 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105373942 Gene

Localization for LOC105373942 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105373942 Gene

Pathways & Interactions for LOC105373942 Gene

SuperPathways for LOC105373942 Gene

No Data Available

Interacting Proteins for LOC105373942 Gene

Gene Ontology (GO) - Biological Process for LOC105373942 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105373942 Gene

Drugs & Compounds for LOC105373942 Gene

No Compound Related Data Available

Transcripts for LOC105373942 Gene

mRNA/cDNA for LOC105373942 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105373942 Gene

No ASD Table

Relevant External Links for LOC105373942 Gene

GeneLoc Exon Structure for
LOC105373942

Expression for LOC105373942 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105373942 Gene

Orthologs for LOC105373942 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC105373942 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 99 (a)
OneToOne
Species where no ortholog for LOC105373942 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC105373942 Gene

ENSEMBL:
Gene Tree for LOC105373942 (if available)
TreeFam:
Gene Tree for LOC105373942 (if available)

Paralogs for LOC105373942 Gene

No data available for Paralogs for LOC105373942 Gene

Variants for LOC105373942 Gene

Sequence variations from dbSNP and Humsavar for LOC105373942 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000041890 -- 235,791,121(+) ACAAT(A/G)TAGAG intron-variant, nc-transcript-variant
rs1000094107 -- 235,758,421(+) GGTAC(A/G)TGGTG intron-variant
rs1000099766 -- 235,762,993(+) AACCA(C/G/T)TGACA intron-variant
rs1000168878 -- 235,772,078(+) GCAAC(C/T)TCCGC intron-variant
rs1000364521 -- 235,767,646(+) TGCAG(A/G)CAGTA intron-variant

Variation tolerance for LOC105373942 Gene

Gene Damage Index Score: 4.48; 64.35% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for LOC105373942 Gene

Disorders for LOC105373942 Gene

Relevant External Links for LOC105373942

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC105373942

No disorders were found for LOC105373942 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105373942 Gene

Publications for LOC105373942 Gene

No publications were found for LOC105373942 Gene.

Products for LOC105373942 Gene

Sources for LOC105373942 Gene

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