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Aliases for LOC105373885 Gene

Subcategory (RNA class) for LOC105373885 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105373885 Gene

  • Uncharacterized LOC105373885 3

External Ids for LOC105373885 Gene

Previous GeneCards Identifiers for LOC105373885 Gene

  • GC02U903793

Summaries for LOC105373885 Gene

GeneCards Summary for LOC105373885 Gene

LOC105373885 (Uncharacterized LOC105373885) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105373885 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105373885 Gene

Genomics for LOC105373885 Gene

Regulatory Elements for LOC105373885 Gene

Enhancers for LOC105373885 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H219520 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -5.0 -4978 3 HDGF PKNOX1 ATF1 ARNT ETS1 TCF12 GTF3C2 ZNF766 GLIS2 GATA2 ASIC4 CNOT9 NHEJ1 USP37 SLC23A3 BCS1L ANKZF1 TMEM198 ENSG00000269068 ENSG00000272644
GH02H219529 1.2 Ensembl ENCODE 0.4 -13.2 -13228 0 ELF3 RB1 ARID4B KLF17 ZNF2 RAD21 GLIS2 ZNF143 RCOR1 ZNF391 TMEM198 LOC105373885
GH02H219537 0.7 ENCODE 0.3 -21.5 -21485 2 KLF11 TFAP4 MAZ SAP130 ARID4B KLF17 RAD21 ZIC2 GLIS2 EGR1 ASIC4 ENSG00000227432 GMPPA SPEG OBSL1 TMEM198 LOC105373885
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105373885 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105373885 Gene

Chromosome:
2
Start:
219,481,732 bp from pter
End:
219,517,047 bp from pter
Size:
35,316 bases
Orientation:
Minus strand

Genomic View for LOC105373885 Gene

Genes around LOC105373885 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105373885 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105373885 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105373885 Gene

Proteins for LOC105373885 Gene

Post-translational modifications for LOC105373885 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105373885 Gene

Domains & Families for LOC105373885 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105373885 Gene

Function for LOC105373885 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105373885 Gene

Localization for LOC105373885 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105373885 Gene

Pathways & Interactions for LOC105373885 Gene

SuperPathways for LOC105373885 Gene

No Data Available

Interacting Proteins for LOC105373885 Gene

Gene Ontology (GO) - Biological Process for LOC105373885 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105373885 Gene

Drugs & Compounds for LOC105373885 Gene

No Compound Related Data Available

Transcripts for LOC105373885 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105373885 Gene

No ASD Table

Relevant External Links for LOC105373885 Gene

GeneLoc Exon Structure for
LOC105373885

No data available for mRNA/cDNA for LOC105373885 Gene

Expression for LOC105373885 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105373885 Gene

Orthologs for LOC105373885 Gene

No data available for Orthologs and Evolution for LOC105373885 Gene

Paralogs for LOC105373885 Gene

No data available for Paralogs for LOC105373885 Gene

Variants for LOC105373885 Gene

Sequence variations from dbSNP and Humsavar for LOC105373885 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs397518460 Pathogenic 219,501,903(+) ATTTT(C/T)GAGAC intron-variant, nc-transcript-variant, reference, stop-gained
rs397518461 Pathogenic 219,506,260(+) AGCAC(A/C)CGTGT intron-variant, nc-transcript-variant, reference, missense
rs397518462 Pathogenic 219,504,138(+) CTGCG(A/G)CATCT intron-variant, nc-transcript-variant, reference, missense
rs587777672 Pathogenic 219,484,160(+) CCCCC(A/C/G/T)AGGCC intron-variant, reference, missense
rs587777676 Pathogenic 219,489,174(+) GCAGG(G/T)GCCCT intron-variant, reference, missense

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105373885 Gene

Disorders for LOC105373885 Gene

No disorders were found for LOC105373885 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105373885 Gene

Publications for LOC105373885 Gene

No publications were found for LOC105373885 Gene.

Products for LOC105373885 Gene

Sources for LOC105373885 Gene

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