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Aliases for LOC105373159 Gene

Subcategory (RNA class) for LOC105373159 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105373159 Gene

  • Uncharacterized LOC105373159 3
  • AL162595.1 5

External Ids for LOC105373159 Gene

Previous GeneCards Identifiers for LOC105373159 Gene

  • GC01U904767

Summaries for LOC105373159 Gene

GeneCards Summary for LOC105373159 Gene

LOC105373159 (Uncharacterized LOC105373159) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105373159 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105373159 Gene

Genomics for LOC105373159 Gene

Regulatory Elements for LOC105373159 Gene

Enhancers for LOC105373159 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H230142 2.1 VISTA FANTOM5 Ensembl ENCODE dbSUPER 14.6 -874.5 -874469 5.8 HDGF PKNOX1 ARNT FEZF1 YY1 ZNF766 REST ZNF662 SMARCB1 ZNF592 NUP133 URB2 LOC105373159 COG2 HMGN2P19 GC01P230113 GC01M230200
GH01H229219 2 FANTOM5 Ensembl ENCODE dbSUPER 12.1 +49.1 49098 4.5 HDGF PKNOX1 FOXA2 ARNT ARID4B YBX1 FEZF1 DMAP1 ZNF2 YY1 NUP133 ENSG00000269890 URB2 HMGN2P19 HIST3H3 LOC105373158 TAF5L ENSG00000233920 ENSG00000226920 LOC100421842
GH01H228781 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +488.0 487982 3.7 FEZF1 ZNF2 ZNF302 ZNF416 FOS REST KAT8 MIER3 ZNF610 ZSCAN16 NUP133 CICP26 C1orf35 ENSG00000269890 HMGN2P19 HIST3H3 TAF5L ABCB10 PRSS38 URB2
GH01H228646 1.8 FANTOM5 Ensembl ENCODE 11.9 +623.0 623007 2.8 HDGF ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2 ZNF302 DEK SP3 CICP26 HMGN2P19 C1orf35 LOC105373159 ENSG00000269890 NUP133 RHOU HIST3H3 TAF5L DUSP5P1
GH01H228455 1.4 ENCODE dbSUPER 11.9 +813.2 813155 4.1 HNRNPUL1 PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZNF766 CBX5 ZNF302 ZNF207 CICP26 C1orf35 ENSG00000269890 ZNF678 HIST3H3 PRSS38 LOC100421842 ENSG00000233920 LOC105373159 JMJD4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105373159 on UCSC Golden Path with GeneCards custom track

Promoters for LOC105373159 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000021466 -456 1401 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 CBX5

Genomic Locations for LOC105373159 Gene

Genomic Locations for LOC105373159 Gene
chr1:229,257,840-229,271,044
(GRCh38/hg38)
Size:
13,205 bases
Orientation:
Minus strand
chr1:229,394,028-229,406,775
(GRCh37/hg19)

Genomic View for LOC105373159 Gene

Genes around LOC105373159 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105373159 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105373159 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105373159 Gene

Proteins for LOC105373159 Gene

Post-translational modifications for LOC105373159 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105373159 Gene

Domains & Families for LOC105373159 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105373159 Gene

Function for LOC105373159 Gene

Phenotypes From GWAS Catalog for LOC105373159 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105373159 Gene

Localization for LOC105373159 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105373159 Gene

Pathways & Interactions for LOC105373159 Gene

SuperPathways for LOC105373159 Gene

No Data Available

Interacting Proteins for LOC105373159 Gene

Gene Ontology (GO) - Biological Process for LOC105373159 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105373159 Gene

Drugs & Compounds for LOC105373159 Gene

No Compound Related Data Available

Transcripts for LOC105373159 Gene

mRNA/cDNA for LOC105373159 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105373159 Gene

No ASD Table

Relevant External Links for LOC105373159 Gene

GeneLoc Exon Structure for
LOC105373159

Expression for LOC105373159 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105373159 Gene

Orthologs for LOC105373159 Gene

Evolution for LOC105373159 Gene

ENSEMBL:
Gene Tree for LOC105373159 (if available)
TreeFam:
Gene Tree for LOC105373159 (if available)

No data available for Orthologs for LOC105373159 Gene

Paralogs for LOC105373159 Gene

No data available for Paralogs for LOC105373159 Gene

Variants for LOC105373159 Gene

Sequence variations from dbSNP and Humsavar for LOC105373159 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000375860 -- 229,259,139(+) AAAAA(A/G)AAAGA intron-variant
rs1000661313 -- 229,264,174(+) CCTGT(A/G)GGACT intron-variant
rs1000734882 -- 229,263,903(+) TCCCA(A/C/G)AGTCC intron-variant
rs1000902772 -- 229,258,055(+) TTTTC(A/G)TAACT nc-transcript-variant, upstream-variant-2KB
rs1000944942 -- 229,269,772(+) GAAAA(A/C)ACTGC intron-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105373159 Gene

Disorders for LOC105373159 Gene

No disorders were found for LOC105373159 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105373159 Gene

Publications for LOC105373159 Gene

No publications were found for LOC105373159 Gene.

Products for LOC105373159 Gene

Sources for LOC105373159 Gene

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