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Aliases for LOC105372497 Gene

Subcategory (RNA class) for LOC105372497 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105372497 Gene

  • Uncharacterized LOC105372497 3

External Ids for LOC105372497 Gene

Previous GeneCards Identifiers for LOC105372497 Gene

  • GC20U901062

Summaries for LOC105372497 Gene

GeneCards Summary for LOC105372497 Gene

LOC105372497 (Uncharacterized LOC105372497) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372497 Gene

Genomics for LOC105372497 Gene

Regulatory Elements for LOC105372497 Gene

Enhancers for LOC105372497 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G001415 2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.5 -6457 4.4 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF143 FOS SP3 JUNB SDCBP2 TBC1D20 NSFL1C FKBP1A SIRPA LOC105372497 GC20M001435
GH20G001411 1.1 dbSUPER 0.7 -0.9 -906 0.9 FOXA2 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ENSG00000229728 NSFL1C SDCBP2 LOC105372497 GC20M001435
GH20G001394 1.5 Ensembl ENCODE dbSUPER 0.4 +11.8 11833 8.9 FOXA2 SIN3A ARID4B YY1 TCF12 ZNF766 GATA2 FOS ZNF263 MXD4 SDCBP2 FKBP1A NSFL1C FKBP1A-SDCBP2 LOC105372497
GH20G001420 1.4 Ensembl ENCODE dbSUPER 0.4 -11.7 -11737 3.9 ELF3 PKNOX1 FOXA2 SIN3A ARID4B BMI1 RAD21 YY1 THAP11 MIXL1 NSFL1C SIRPB2 SDCBP2 GC20M001435 LOC105372497
GH20G001426 1.3 Ensembl ENCODE dbSUPER 0.4 -16.3 -16284 2.1 CBX3 ZNF133 MAX CHD7 ZIC2 GATA3 ZBTB48 SCRT2 SCRT1 L3MBTL2 NSFL1C SDCBP2 GC20M001435 LOC105372497
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105372497 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105372497 Gene

Chromosome:
20
Start:
1,405,146 bp from pter
End:
1,411,146 bp from pter
Size:
6,001 bases
Orientation:
Minus strand

Genomic View for LOC105372497 Gene

Genes around LOC105372497 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372497 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372497 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372497 Gene

Proteins for LOC105372497 Gene

Post-translational modifications for LOC105372497 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372497 Gene

Domains & Families for LOC105372497 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372497 Gene

Function for LOC105372497 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372497 Gene

Localization for LOC105372497 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105372497 Gene

Pathways & Interactions for LOC105372497 Gene

SuperPathways for LOC105372497 Gene

No Data Available

Interacting Proteins for LOC105372497 Gene

Gene Ontology (GO) - Biological Process for LOC105372497 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372497 Gene

Drugs & Compounds for LOC105372497 Gene

No Compound Related Data Available

Transcripts for LOC105372497 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372497 Gene

No ASD Table

Relevant External Links for LOC105372497 Gene

GeneLoc Exon Structure for
LOC105372497

No data available for mRNA/cDNA for LOC105372497 Gene

Expression for LOC105372497 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372497 Gene

Orthologs for LOC105372497 Gene

No data available for Orthologs and Evolution for LOC105372497 Gene

Paralogs for LOC105372497 Gene

No data available for Paralogs for LOC105372497 Gene

Variants for LOC105372497 Gene

Sequence variations from dbSNP and Humsavar for LOC105372497 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000265431 -- 1,411,604(+) AATCT(C/G)TTTAT upstream-variant-2KB
rs1000323959 -- 1,411,918(+) CCTGT(C/G)TTCAC upstream-variant-2KB
rs1000813018 -- 1,406,034(+) TGTGC(C/T)TCAAC intron-variant
rs1000881841 -- 1,404,788(+) CCAGG(C/T)TAGAG downstream-variant-500B
rs1001024049 -- 1,406,967(+) GCTTA(-/T)TGTAA intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105372497 Gene

Disorders for LOC105372497 Gene

No disorders were found for LOC105372497 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372497 Gene

Publications for LOC105372497 Gene

No publications were found for LOC105372497 Gene.

Products for LOC105372497 Gene

Sources for LOC105372497 Gene

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