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Aliases for LOC105372457 Gene

Subcategory (RNA class) for LOC105372457 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105372457 Gene

  • Uncharacterized LOC105372457 3
  • AC008440.1 5

External Ids for LOC105372457 Gene

Previous GeneCards Identifiers for LOC105372457 Gene

  • GC19U902065

Summaries for LOC105372457 Gene

GeneCards Summary for LOC105372457 Gene

LOC105372457 (Uncharacterized LOC105372457) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372457 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372457 Gene

Genomics for LOC105372457 Gene

Regulatory Elements for LOC105372457 Gene

Enhancers for LOC105372457 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H054199 1.9 FANTOM5 ENCODE dbSUPER 9.8 -336.0 -335990 12 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D PRPF31 CNOT3 LENG8 LENG8-AS1 ZNF525 LILRB5 ZNF845 ZNF765 ENSG00000235681 RPS9
GH19H053907 1.4 FANTOM5 Ensembl ENCODE 12.5 -39.6 -39567 2 MXI1 SUZ12 ZNF76 DEAF1 ZNF644 ETS1 ZNF766 POLR2A ZNF143 PRDM10 PRKCG ENSG00000232220 LOC105372457 CACNG7 MYADM CACNG8
GH19H053889 1.3 Ensembl ENCODE dbSUPER 12.6 -20.3 -20288 1 KLF1 ZNF384 POLR2A PATZ1 SCRT2 PRDM10 KLF8 CREM TCF7L2 SCRT1 MYADM LOC105372457 ENSG00000232324 PRKCG CACNG7
GH19H053840 1.2 Ensembl ENCODE 12.1 +27.6 27593 2 PKNOX1 ATF1 ARNT ARID4B SIN3A ZNF143 FOS ATF7 SP3 REST LOC105372457 ENSG00000232220 PRKCG CACNG6 MIR935 MIR1283-1 MIR520A MIR519C MIR515-2 MIR515-1
GH19H053848 1.1 FANTOM5 Ensembl ENCODE 12.4 +20.3 20348 1 MEF2D ZNF146 POLR2A IKZF1 KDM1A LOC105372457 ENSG00000232220 PRKCG MIR935 CACNG6 MYADM VSTM1 OSCAR NLRP12 LILRA5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105372457 on UCSC Golden Path with GeneCards custom track

Promoters for LOC105372457 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000289128 721 3201 HDGF MLX ZFP64 ARID4B SIN3A DMAP1 ZBTB7B SP3 SP5 MXD4

Genomic Location for LOC105372457 Gene

Chromosome:
19
Start:
53,853,560 bp from pter
End:
53,869,721 bp from pter
Size:
16,162 bases
Orientation:
Minus strand

Genomic View for LOC105372457 Gene

Genes around LOC105372457 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372457 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372457 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372457 Gene

Proteins for LOC105372457 Gene

Post-translational modifications for LOC105372457 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372457 Gene

Domains & Families for LOC105372457 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372457 Gene

Function for LOC105372457 Gene

Phenotypes From GWAS Catalog for LOC105372457 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372457 Gene

Localization for LOC105372457 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372457 Gene

Pathways & Interactions for LOC105372457 Gene

SuperPathways for LOC105372457 Gene

No Data Available

Interacting Proteins for LOC105372457 Gene

Gene Ontology (GO) - Biological Process for LOC105372457 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372457 Gene

Drugs & Compounds for LOC105372457 Gene

No Compound Related Data Available

Transcripts for LOC105372457 Gene

mRNA/cDNA for LOC105372457 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372457 Gene

No ASD Table

Relevant External Links for LOC105372457 Gene

GeneLoc Exon Structure for
LOC105372457

Expression for LOC105372457 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372457 Gene

Orthologs for LOC105372457 Gene

Evolution for LOC105372457 Gene

ENSEMBL:
Gene Tree for LOC105372457 (if available)
TreeFam:
Gene Tree for LOC105372457 (if available)

No data available for Orthologs for LOC105372457 Gene

Paralogs for LOC105372457 Gene

No data available for Paralogs for LOC105372457 Gene

Variants for LOC105372457 Gene

Sequence variations from dbSNP and Humsavar for LOC105372457 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000084182 -- 53,870,495(+) CTCCT(-/ATAGG)AGATC intron-variant, upstream-variant-2KB
rs1000331964 -- 53,864,935(+) ACTCA(A/G)GAGTG intron-variant, upstream-variant-2KB
rs1000896591 -- 53,860,017(+) GTGAG(-/CTGTGATCACGCCA)CTGTG intron-variant
rs1001029539 -- 53,858,899(+) GAACC(C/G)AGGAG intron-variant
rs1001063307 -- 53,865,696(+) TCTAC(A/G)AGGGA intron-variant, upstream-variant-2KB, utr-variant-5-prime

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105372457 Gene

Disorders for LOC105372457 Gene

Relevant External Links for LOC105372457

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC105372457

No disorders were found for LOC105372457 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105372457 Gene

Publications for LOC105372457 Gene

No publications were found for LOC105372457 Gene.

Products for LOC105372457 Gene

Sources for LOC105372457 Gene

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