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Aliases for LOC105371184 Gene

Subcategory (RNA class) for LOC105371184 Gene

lncRNA

Aliases for LOC105371184 Gene

  • Uncharacterized LOC105371184 3
  • LA16c-313D11.9 3 5
  • Uncharacterized Protein LOC440330 3

External Ids for LOC105371184 Gene

ORGUL Members for LOC105371184 Gene

Previous GeneCards Identifiers for LOC105371184 Gene

  • GC16U902239

Summaries for LOC105371184 Gene

GeneCards Summary for LOC105371184 Gene

LOC105371184 (Uncharacterized LOC105371184) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105371184 Gene

Genomics for LOC105371184 Gene

Regulatory Elements for LOC105371184 Gene

Enhancers for LOC105371184 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G001271 1.1 ENCODE 19 -591.3 -591300 1.6 PKNOX1 SIN3A FEZF1 ZNF2 ZNF302 ZNF416 SP3 REST ZNF662 ZNF592 JPT2 ENSG00000261505 RHOT2 IFT140 ENSG00000260646 ENSG00000260051 LOC105371038 ENSG00000262528 JMJD8 ENSG00000260954
GH16G000323 2 FANTOM5 Ensembl ENCODE dbSUPER 10.4 +354.1 354095 5.3 PKNOX1 CREB3L1 ARNT AGO1 SIN3A FEZF1 ZNF2 YY1 ZNF766 ZNF416 TMEM8A LUC7L FAM234A LOC100129478 ENSG00000228779 ENSG00000268836 LOC105371184 PDIA2 AXIN1 NHLRC4
GH16G000033 1.5 FANTOM5 Ensembl ENCODE 10.4 +645.5 645510 2.4 HDGF PTBP1 PKNOX1 AGO1 ZSCAN4 SIN3A KLF17 BMI1 ZNF2 EGR1 IL9RP3 SNRNP25 ENSG00000228779 ENSG00000262528 LOC105371184 LUC7L HBA1 HBA2 HBQ1 AXIN1
GH16G001377 1.4 ENCODE dbSUPER 10.4 -698.3 -698314 3.3 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF766 CBX5 IFT140 CCDC154 JPT2 ENSG00000262528 GNPTG TSR3 RNPS1 CHTF18 TMEM204 LOC105371038
GH16G000378 1.3 ENCODE dbSUPER 10.4 +298.8 298788 6.1 PKNOX1 AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 ETS1 SLC30A9 ZNF121 TMEM8A MRPL28 ENSG00000228779 LOC105371184 LOC100134368
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105371184 on UCSC Golden Path with GeneCards custom track

Promoters for LOC105371184 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000082223 227 1801 HNRNPUL1 PKNOX1 AGO1 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF143 KLF13

Genomic Location for LOC105371184 Gene

Chromosome:
16
Start:
678,504 bp from pter
End:
680,527 bp from pter
Size:
2,024 bases
Orientation:
Minus strand

Genomic View for LOC105371184 Gene

Genes around LOC105371184 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105371184 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105371184 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105371184 Gene

Proteins for LOC105371184 Gene

Post-translational modifications for LOC105371184 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105371184 Gene

Domains & Families for LOC105371184 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105371184 Gene

Function for LOC105371184 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105371184 Gene

Localization for LOC105371184 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105371184 Gene

Pathways & Interactions for LOC105371184 Gene

SuperPathways for LOC105371184 Gene

No Data Available

Interacting Proteins for LOC105371184 Gene

Gene Ontology (GO) - Biological Process for LOC105371184 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105371184 Gene

Drugs & Compounds for LOC105371184 Gene

No Compound Related Data Available

Transcripts for LOC105371184 Gene

mRNA/cDNA for LOC105371184 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105371184 Gene

No ASD Table

Relevant External Links for LOC105371184 Gene

GeneLoc Exon Structure for
LOC105371184

Expression for LOC105371184 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105371184 Gene

Orthologs for LOC105371184 Gene

Evolution for LOC105371184 Gene

ENSEMBL:
Gene Tree for LOC105371184 (if available)
TreeFam:
Gene Tree for LOC105371184 (if available)

No data available for Orthologs for LOC105371184 Gene

Paralogs for LOC105371184 Gene

No data available for Paralogs for LOC105371184 Gene

Variants for LOC105371184 Gene

Sequence variations from dbSNP and Humsavar for LOC105371184 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs587777340 Pathogenic 681,572(+) CCTAC(C/T)TCTCC intron-variant, upstream-variant-2KB, reference, missense
rs587777341 Pathogenic 681,468(+) GCTGA(A/T)CTTCG intron-variant, upstream-variant-2KB, reference, missense
rs587777342 Pathogenic 681,520(+) CGCTG(A/G/T)AACAG intron-variant, upstream-variant-2KB, reference, missense, stop-gained
rs587777344 Pathogenic 681,446(+) ACAGC(C/G/T)TGGCC intron-variant, upstream-variant-2KB, reference, synonymous-codon, missense
rs587777346 Pathogenic 681,227(+) AGCAG(A/G)CCCTG intron-variant, upstream-variant-2KB, reference, missense

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105371184 Gene

Disorders for LOC105371184 Gene

Relevant External Links for LOC105371184

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC105371184

No disorders were found for LOC105371184 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105371184 Gene

Publications for LOC105371184 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC105371184 Gene

Sources for LOC105371184 Gene

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