Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105369536 Gene

Subcategory (RNA class) for LOC105369536 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105369536 Gene

  • Uncharacterized LOC105369536 3
  • AP000977.1 5

External Ids for LOC105369536 Gene

Previous GeneCards Identifiers for LOC105369536 Gene

  • GC11U902340

Summaries for LOC105369536 Gene

GeneCards Summary for LOC105369536 Gene

LOC105369536 (Uncharacterized LOC105369536) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369536 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369536 Gene

Genomics for LOC105369536 Gene

Regulatory Elements for LOC105369536 Gene

Enhancers for LOC105369536 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H121416 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +34.8 34849 2.7 TBL1XR1 RAD21 YY1 ZNF143 RUNX3 CREM IKZF2 CBFB SP1 ZNF341 SORL1 LOC105369536 BMPR1APS2 GC11P121409 ENSG00000271022
GH11H121481 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.8 -30.7 -30678 5 HDGF PKNOX1 SP3 MAX ELF1 EBF1 RELA POLR2A IKZF1 ETV6 SORL1 LOC105369536 LOC105369535 PIR43409
GH11H121493 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -41.6 -41640 1.7 TBL1XR1 MAX POLR2A EED ETV6 ATF7 RUNX3 IKZF2 CREM MAZ SORL1 LOC105369536 SC5D TECTA GC11M121490 GC11M121501
GH11H121588 1.4 Ensembl ENCODE dbSUPER 11.9 -136.7 -136744 3.5 HDGF PKNOX1 TBL1XR1 BMI1 BATF RAD21 YY1 ZNF143 ATF7 ETV6 LOC105369536 SORL1 GC11P121607 GC11P121528
GH11H121477 1.2 Ensembl ENCODE dbSUPER 12.2 -26.1 -26062 2.2 HDGF ZSCAN4 MAX PAX8 CTBP1 GATA3 POLR2A TCF7L2 SMARCE1 ZNF687 SORL1 LOC105369536 GC11P121477 LOC105369535
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105369536 on UCSC Golden Path with GeneCards custom track

Promoters for LOC105369536 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000046003 413 2001 MLX ARNT SIN3A ARID4B YY1 SLC30A9 ZNF143 RUNX3 REST ZNF592

Genomic Locations for LOC105369536 Gene

Genomic Locations for LOC105369536 Gene
chr11:121,439,082-121,453,013
(GRCh38/hg38)
Size:
13,932 bases
Orientation:
Minus strand
chr11:121,318,040-121,323,722
(GRCh37/hg19)

Genomic View for LOC105369536 Gene

Genes around LOC105369536 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369536 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369536 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369536 Gene

Proteins for LOC105369536 Gene

Post-translational modifications for LOC105369536 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369536 Gene

Domains & Families for LOC105369536 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369536 Gene

Function for LOC105369536 Gene

Phenotypes From GWAS Catalog for LOC105369536 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369536 Gene

Localization for LOC105369536 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369536 Gene

Pathways & Interactions for LOC105369536 Gene

SuperPathways for LOC105369536 Gene

No Data Available

Interacting Proteins for LOC105369536 Gene

Gene Ontology (GO) - Biological Process for LOC105369536 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369536 Gene

Drugs & Compounds for LOC105369536 Gene

No Compound Related Data Available

Transcripts for LOC105369536 Gene

mRNA/cDNA for LOC105369536 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369536 Gene

No ASD Table

Relevant External Links for LOC105369536 Gene

GeneLoc Exon Structure for
LOC105369536

Expression for LOC105369536 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369536 Gene

Orthologs for LOC105369536 Gene

Evolution for LOC105369536 Gene

ENSEMBL:
Gene Tree for LOC105369536 (if available)
TreeFam:
Gene Tree for LOC105369536 (if available)

No data available for Orthologs for LOC105369536 Gene

Paralogs for LOC105369536 Gene

No data available for Paralogs for LOC105369536 Gene

Variants for LOC105369536 Gene

Sequence variations from dbSNP and Humsavar for LOC105369536 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000031627 -- 121,440,088(+) ATACC(C/T)CAGGG intron-variant
rs1000266325 -- 121,445,512(+) CTTCC(C/T)AGCCT intron-variant, nc-transcript-variant
rs1000429006 -- 121,452,729(+) GACTT(C/T)CCGGC intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000481330 -- 121,453,004(+) TACAC(A/G)GAACA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000875030 -- 121,446,961(+) TGTAC(A/G)GCAAA intron-variant, nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105369536 Gene

Disorders for LOC105369536 Gene

Relevant External Links for LOC105369536

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC105369536

No disorders were found for LOC105369536 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105369536 Gene

Publications for LOC105369536 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for LOC105369536 Gene

Sources for LOC105369536 Gene

Content
Loading form....