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Aliases for LOC103171574 Gene

Subcategory (RNA class) for LOC103171574 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC103171574 Gene

  • Uncharacterized LOC103171574 3
  • AC243562.3 5

External Ids for LOC103171574 Gene

Summaries for LOC103171574 Gene

GeneCards Summary for LOC103171574 Gene

LOC103171574 (Uncharacterized LOC103171574) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC103171574 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC103171574 Gene

Genomics for LOC103171574 Gene

Regulatory Elements for LOC103171574 Gene

Enhancers for LOC103171574 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H084714 1.4 ENCODE dbSUPER 21.5 +293.4 293443 3 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZBTB7B YY1 SCAND2P GOLGA6L5P WDR73 NMB GOLGA6L4 LINC00933 UBE2Q2P1 CSPG4P12 GOLGA6L3 LOC103171574
GH15H085403 1.8 FANTOM5 Ensembl ENCODE dbSUPER 13.4 +983.7 983688 5 HDGF FOXA2 GLIS2 FOS ATF7 RUNX3 JUNB ZNF518A NFIL3 MAFF GOLGA6L5P LINC00933 UBE2Q2P1 ENSG00000259276 LOC103171574 FABP5P9 GOLGA6L3 WDR73 ADAMTS7P4 SCAND2P
GH15H084999 1.2 Ensembl ENCODE dbSUPER 10.6 +578.1 578051 1 FOXA2 MAX ZNF16 REST RAD21 FOXA1 NR2F2 GABPA JUND PRDM6 GOLGA6L5P GOLGA6L4 LINC00933 GOLGA6L3 UBE2Q2P1 WDR73 LOC103171574 CSPG4P11 SCAND2P AKAP13
GH15H083446 1.2 ENCODE dbSUPER 10.6 -975.3 -975330 1 ATF1 SIN3A ZNF2 ZBTB7B GLIS2 FOS ZNF202 SP3 REST SMARCB1 GOLGA6L4 C15orf40 WHAMM SNHG21 FAM103A1 LOC103171574 CSPG4P11 SH3GL3 GOLGA2P7 GC15M083457
GH15H084910 2 FANTOM5 Ensembl ENCODE dbSUPER 5.2 +490.8 490827 5 HDGF FOXA2 PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B GOLGA2P7 CSPG4P11 LOC103171574 LINC00933 GOLGA6L3 SLC28A1 GC15M084891 GC15M084941 RNU6-339P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC103171574 on UCSC Golden Path with GeneCards custom track

Promoters for LOC103171574 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000080390 -619 1401 CTCF ZFP69B ZNF692 ZSCAN4 ZBTB8A ZBTB26 ATF2 ZBTB20

Genomic Location for LOC103171574 Gene

Chromosome:
15
Start:
84,422,519 bp from pter
End:
84,425,882 bp from pter
Size:
3,364 bases
Orientation:
Plus strand

Genomic View for LOC103171574 Gene

Genes around LOC103171574 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC103171574 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC103171574 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC103171574 Gene

Proteins for LOC103171574 Gene

Post-translational modifications for LOC103171574 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC103171574 Gene

Domains & Families for LOC103171574 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC103171574 Gene

Function for LOC103171574 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC103171574 Gene

Localization for LOC103171574 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC103171574 Gene

Pathways & Interactions for LOC103171574 Gene

SuperPathways for LOC103171574 Gene

No Data Available

Interacting Proteins for LOC103171574 Gene

Gene Ontology (GO) - Biological Process for LOC103171574 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC103171574 Gene

Drugs & Compounds for LOC103171574 Gene

No Compound Related Data Available

Transcripts for LOC103171574 Gene

mRNA/cDNA for LOC103171574 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC103171574 Gene

No ASD Table

Relevant External Links for LOC103171574 Gene

GeneLoc Exon Structure for
LOC103171574

Expression for LOC103171574 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC103171574 Gene

genes like me logo Genes that share expression patterns with LOC103171574: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC103171574 Gene

Orthologs for LOC103171574 Gene

Evolution for LOC103171574 Gene

ENSEMBL:
Gene Tree for LOC103171574 (if available)
TreeFam:
Gene Tree for LOC103171574 (if available)

No data available for Orthologs for LOC103171574 Gene

Paralogs for LOC103171574 Gene

No data available for Paralogs for LOC103171574 Gene

Variants for LOC103171574 Gene

Sequence variations from dbSNP and Humsavar for LOC103171574 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000285466 -- 84,424,874(+) CCTTG(G/T)GCTGC intron-variant
rs1000501723 -- 84,426,184(+) TTTCT(C/G)TCTGC downstream-variant-500B
rs1000572435 -- 84,423,587(+) CCCGA(A/G)GGCAC intron-variant
rs1001015137 -- 84,426,331(+) TGTGA(A/C)TTGAC downstream-variant-500B
rs1002340737 -- 84,425,635(+) TGTTA(C/G)ACTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC103171574 Gene

Variant ID Type Subtype PubMed ID
dgv2638n100 CNV gain 25217958
dgv2641n100 CNV loss 25217958
dgv2642n100 CNV gain+loss 25217958
esv22023 CNV gain 19812545
esv2672879 CNV deletion 23128226
esv2760048 CNV gain+loss 17122850
esv2761880 CNV gain 21179565
esv3569809 CNV gain 25503493
nsv428310 CNV gain+loss 18775914
nsv518289 CNV loss 19592680
nsv9290 CNV gain+loss 18304495
nsv974657 CNV duplication 23825009
nsv976960 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC103171574 Gene

Disorders for LOC103171574 Gene

Relevant External Links for LOC103171574

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC103171574

No disorders were found for LOC103171574 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC103171574 Gene

Publications for LOC103171574 Gene

No publications were found for LOC103171574 Gene.

Products for LOC103171574 Gene

Sources for LOC103171574 Gene

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