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Aliases for LOC102725258 Gene

Subcategory (RNA class) for LOC102725258 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC102725258 Gene

  • Uncharacterized LOC102725258 3
  • AC024257.3 5

External Ids for LOC102725258 Gene

Previous GeneCards Identifiers for LOC102725258 Gene

  • GC12U901976

Summaries for LOC102725258 Gene

GeneCards Summary for LOC102725258 Gene

LOC102725258 (Uncharacterized LOC102725258) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102725258 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102725258 Gene

Genomics for LOC102725258 Gene

Regulatory Elements for LOC102725258 Gene

Enhancers for LOC102725258 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H049129 1.5 ENCODE dbSUPER 29.9 +934.4 934365 4.6 MLX FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 SP3 DDX23 SMARCD1 LMBR1L LOC390314 KMT2D BCDIN3D PRPF40B KANSL2 CCNT1 LOC100422296
GH12H047831 1.7 FANTOM5 Ensembl ENCODE dbSUPER 21.4 -362.7 -362675 5 HDGF ATF1 TCF12 GATA2 ATF7 RUNX3 MCM3 SMARCA4 ZNF184 GLIS1 LOC390314 SENP1 LOC102725258 CCNT1 HDAC7 CCDC184 H1FNT KANSL2 RPAP3 CACNB3
GH12H049055 1.7 FANTOM5 ENCODE dbSUPER 18.2 +861.5 861501 6.7 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 SP3 NFYC ZFP41 MEF2D DDX23 LOC390314 LMBR1L CCNT1 KANSL2 KMT2D SENP1 LOC100422296 PRPF40B OR5BK1P
GH12H048865 1.1 ENCODE 21.4 +669.2 669229 2.2 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9 DDX23 KMT2D KANSL2 LOC390314 CCNT1 LMBR1L SENP1 BCDIN3D PRPF40B ENSG00000257964
GH12H047804 2 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -379.3 -379254 25.6 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 LOC390314 KANSL2 HDAC7 CCNT1 RAPGEF3 ASB8 VDR SENP1 SLC48A1 LOC102725258
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC102725258 on UCSC Golden Path with GeneCards custom track

Promoters for LOC102725258 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000051503 1398 1601 HDGF PKNOX1 ARNT SIN3A ZNF2 YY1 ZNF143 ZNF207 FOS SP3

Genomic Locations for LOC102725258 Gene

Genomic Locations for LOC102725258 Gene
chr12:48,197,002-48,252,461
(GRCh38/hg38)
Size:
55,460 bases
Orientation:
Plus strand

Genomic View for LOC102725258 Gene

Genes around LOC102725258 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102725258 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102725258 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102725258 Gene

Proteins for LOC102725258 Gene

Post-translational modifications for LOC102725258 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102725258 Gene

Domains & Families for LOC102725258 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102725258 Gene

Function for LOC102725258 Gene

Phenotypes From GWAS Catalog for LOC102725258 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102725258 Gene

Localization for LOC102725258 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102725258 Gene

Pathways & Interactions for LOC102725258 Gene

SuperPathways for LOC102725258 Gene

No Data Available

Interacting Proteins for LOC102725258 Gene

Gene Ontology (GO) - Biological Process for LOC102725258 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102725258 Gene

Drugs & Compounds for LOC102725258 Gene

No Compound Related Data Available

Transcripts for LOC102725258 Gene

mRNA/cDNA for LOC102725258 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102725258 Gene

No ASD Table

Relevant External Links for LOC102725258 Gene

GeneLoc Exon Structure for
LOC102725258

Expression for LOC102725258 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102725258 Gene

Orthologs for LOC102725258 Gene

Evolution for LOC102725258 Gene

ENSEMBL:
Gene Tree for LOC102725258 (if available)
TreeFam:
Gene Tree for LOC102725258 (if available)

No data available for Orthologs for LOC102725258 Gene

Paralogs for LOC102725258 Gene

No data available for Paralogs for LOC102725258 Gene

Variants for LOC102725258 Gene

Sequence variations from dbSNP and Humsavar for LOC102725258 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000081596 -- 48,240,197(+) TATAT(A/T)GTACT intron-variant, nc-transcript-variant
rs1000216658 -- 48,221,266(+) ATCAC(A/G)AGGTC intron-variant
rs1000253122 -- 48,200,803(+) TCCCA(A/G)ATGAG intron-variant
rs1000442602 -- 48,228,079(+) CCACT(C/G)TCACC intron-variant
rs1000570007 -- 48,222,664(+) TTTCT(-/TTCTTTCTTTCC)TTCTT intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC102725258 Gene

Disorders for LOC102725258 Gene

No disorders were found for LOC102725258 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102725258 Gene

Publications for LOC102725258 Gene

No publications were found for LOC102725258 Gene.

Products for LOC102725258 Gene

Sources for LOC102725258 Gene

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