Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC102725258 Gene

Subcategory (RNA class) for LOC102725258 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC102725258 Gene

  • Uncharacterized LOC102725258 3
  • RP11-370I10.12 5

External Ids for LOC102725258 Gene

Previous GeneCards Identifiers for LOC102725258 Gene

  • GC12U901976

Summaries for LOC102725258 Gene

GeneCards Summary for LOC102725258 Gene

LOC102725258 (Uncharacterized LOC102725258) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102725258 Gene

Genomics for LOC102725258 Gene

Regulatory Elements for LOC102725258 Gene

Enhancers for LOC102725258 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G047831 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12 -362.7 -362675 5.0 HDGF ATF1 TCF12 GATA2 KDM4B MCM3 TBX21 SMARCA4 GLIS1 NBN CCDC184 LOC102725258 CACNB3 OR5BK1P ENSG00000268069 OR10AD1 HDAC7 ENSG00000205537
GH12G048196 1.3 ENCODE dbSUPER 15.2 +2.2 2176 4.4 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 SIN3A ZNF2 YY1 ZNF143 ZNF207 ZNF641 RPL37P19 SENP1 DDX23 LOC102725258 CCNT1 LOC390314 PFKM H1FNT OR10AD1
GH12G049129 1.5 ENCODE dbSUPER 11.9 +934.4 934365 4.6 MLX CREB3L1 AGO1 DMAP1 YBX1 FEZF1 YY1 SLC30A9 ZNF416 ZNF143 LOC390314 DDX23 CCNT1 KANSL2 PRPF40B LOC105369760 BCDIN3D OR5BK1P CCDC184 LOC100422296
GH12G047716 1.4 Ensembl ENCODE dbSUPER 12 -479.2 -479168 2.4 CBX3 RB1 ZSCAN4 ARID4B ZNF76 KLF17 ZNF2 ZNF48 RAD21 GLIS2 SLC48A1 RAPGEF3 LOC102725258 HDAC7 KANSL2 ENSG00000257433 TMEM106C RPAP3 ENDOU
GH12G049089 1.3 Ensembl ENCODE 11.4 +893.2 893203 0.8 ATF1 ARNT TCF12 GLIS2 GATA2 ZNF143 FOS NCOA1 ZNF592 MBD2 PRPF40B LOC102725258 LOC105369759 PIR50913
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC102725258 on UCSC Golden Path with GeneCards custom track

Promoters for LOC102725258 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000051503 1398 1601 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 SIN3A ZNF2 YY1 ZNF143 ZNF207

Genomic Location for LOC102725258 Gene

Chromosome:
12
Start:
48,197,002 bp from pter
End:
48,252,461 bp from pter
Size:
55,460 bases
Orientation:
Plus strand

Genomic View for LOC102725258 Gene

Genes around LOC102725258 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102725258 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102725258 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102725258 Gene

Proteins for LOC102725258 Gene

Post-translational modifications for LOC102725258 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102725258 Gene

Domains & Families for LOC102725258 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102725258 Gene

Function for LOC102725258 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102725258 Gene

Localization for LOC102725258 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC102725258 Gene

Pathways & Interactions for LOC102725258 Gene

SuperPathways for LOC102725258 Gene

No Data Available

Interacting Proteins for LOC102725258 Gene

Gene Ontology (GO) - Biological Process for LOC102725258 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102725258 Gene

Drugs & Compounds for LOC102725258 Gene

No Compound Related Data Available

Transcripts for LOC102725258 Gene

mRNA/cDNA for LOC102725258 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102725258 Gene

No ASD Table

Relevant External Links for LOC102725258 Gene

GeneLoc Exon Structure for
LOC102725258

Expression for LOC102725258 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102725258 Gene

Orthologs for LOC102725258 Gene

Evolution for LOC102725258 Gene

ENSEMBL:
Gene Tree for LOC102725258 (if available)
TreeFam:
Gene Tree for LOC102725258 (if available)

No data available for Orthologs for LOC102725258 Gene

Paralogs for LOC102725258 Gene

No data available for Paralogs for LOC102725258 Gene

Variants for LOC102725258 Gene

Sequence variations from dbSNP and Humsavar for LOC102725258 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000081596 -- 48,240,197(+) TATAT(A/T)GTACT intron-variant, nc-transcript-variant
rs1000216658 -- 48,221,266(+) ATCAC(A/G)AGGTC intron-variant
rs1000253122 -- 48,200,803(+) TCCCA(A/G)ATGAG intron-variant
rs1000442602 -- 48,228,079(+) CCACT(C/G)TCACC intron-variant
rs1000570007 -- 48,222,664(+) TTTCT(-/TTCTTTCTTTCC)TTCTT intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC102725258 Gene

Disorders for LOC102725258 Gene

No disorders were found for LOC102725258 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102725258 Gene

Publications for LOC102725258 Gene

No publications were found for LOC102725258 Gene.

Products for LOC102725258 Gene

Sources for LOC102725258 Gene

Content
Loading form....