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Aliases for LOC102724404 Gene

Subcategory (RNA class) for LOC102724404 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC102724404 Gene

  • Uncharacterized LOC102724404 3
  • CTB-109A12.1 3 5

External Ids for LOC102724404 Gene

Previous GeneCards Identifiers for LOC102724404 Gene

  • GC05U902027

Summaries for LOC102724404 Gene

GeneCards Summary for LOC102724404 Gene

LOC102724404 (Uncharacterized LOC102724404) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724404 Gene

Genomics for LOC102724404 Gene

Regulatory Elements for LOC102724404 Gene

Enhancers for LOC102724404 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G157382 1.3 Ensembl ENCODE dbSUPER 54.8 +74.4 74385 6.4 PKNOX1 ZNF146 JUN ZMYM3 SIN3A ZNF384 BMI1 RAD21 ZNF316 GATA3 LOC102724404 NIPAL4 ADAM19 GC05P157388 ENSG00000248544
GH05G157389 1.1 ENCODE dbSUPER 55.1 +69.7 69685 2.1 ELF3 FOXA2 ARID4B SIN3A RAD21 RCOR1 FOS SP5 KAT8 PBX2 LOC102724404 NIPAL4 GC05P157388 RPL26P18
GH05G157462 1.9 FANTOM5 Ensembl ENCODE dbSUPER 20.1 -4.2 -4219 2.7 PKNOX1 FOS ZNF263 JUNB TSHZ1 ZNF518A SMARCA4 PBX2 STAT3 NBN NIPAL4 FNDC9 LOC102724404 THG1L ADAM19 HAVCR2 ENSG00000253519
GH05G157514 1.4 FANTOM5 Ensembl ENCODE dbSUPER 18.6 -56.3 -56325 3.7 PKNOX1 BHLHE40 NR2F1 SIN3A JUNB RAD21 NR2F2 FOSL1 JUND PBX2 ADAM19 LOC102724404 FNDC9 NIPAL4 ENSG00000248544 CYFIP2 HAVCR2 ENSG00000253519
GH05G157510 1.4 Ensembl ENCODE dbSUPER 18.6 -52.4 -52418 3.6 ELF3 FOXA2 ARNT SIN3A RAD21 RARA FOS KLF13 CEBPB PPARG NIPAL4 ADAM19 LOC102724404 ENSG00000248544 CYFIP2 ENSG00000253519
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC102724404 on UCSC Golden Path with GeneCards custom track

Promoters for LOC102724404 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000189553 -222 201 CTCF ZNF777 SUZ12 RBBP5 ZIC2 HIC1 ZFHX2 GLIS2 ZBTB48 PATZ1

Genomic Location for LOC102724404 Gene

Chromosome:
5
Start:
157,361,616 bp from pter
End:
157,460,078 bp from pter
Size:
98,463 bases
Orientation:
Minus strand

Genomic View for LOC102724404 Gene

Genes around LOC102724404 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724404 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724404 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724404 Gene

Proteins for LOC102724404 Gene

Post-translational modifications for LOC102724404 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724404 Gene

Domains & Families for LOC102724404 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724404 Gene

Function for LOC102724404 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724404 Gene

Localization for LOC102724404 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC102724404 Gene

Pathways & Interactions for LOC102724404 Gene

SuperPathways for LOC102724404 Gene

No Data Available

Interacting Proteins for LOC102724404 Gene

Gene Ontology (GO) - Biological Process for LOC102724404 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724404 Gene

Drugs & Compounds for LOC102724404 Gene

No Compound Related Data Available

Transcripts for LOC102724404 Gene

mRNA/cDNA for LOC102724404 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724404 Gene

No ASD Table

Relevant External Links for LOC102724404 Gene

GeneLoc Exon Structure for
LOC102724404

Expression for LOC102724404 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC102724404 Gene

genes like me logo Genes that share expression patterns with LOC102724404: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724404 Gene

Orthologs for LOC102724404 Gene

Evolution for LOC102724404 Gene

ENSEMBL:
Gene Tree for LOC102724404 (if available)
TreeFam:
Gene Tree for LOC102724404 (if available)

No data available for Orthologs for LOC102724404 Gene

Paralogs for LOC102724404 Gene

No data available for Paralogs for LOC102724404 Gene

Variants for LOC102724404 Gene

Sequence variations from dbSNP and Humsavar for LOC102724404 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs374248640 Likely benign 157,460,212(+) CCCGG(A/C)GGCTT upstream-variant-2KB, reference, synonymous-codon
rs555788817 Uncertain significance 157,460,094(+) GCGGG(C/T)GGCCC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs886060336 Uncertain significance 157,460,197(+) CCCCT(A/G)GGTCC upstream-variant-2KB, reference, synonymous-codon
rs1105282 Benign 157,460,125(-) GGCAA(C/T)TCCGG upstream-variant-2KB, utr-variant-5-prime
rs1000000193 -- 157,381,313(+) CATTA(C/T)TGTAC intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC102724404 Gene

Disorders for LOC102724404 Gene

Relevant External Links for LOC102724404

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC102724404

No disorders were found for LOC102724404 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC102724404 Gene

Publications for LOC102724404 Gene

  1. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G. … Rudan I. (PLoS Genet. 2013) 3 64

Products for LOC102724404 Gene

Sources for LOC102724404 Gene

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