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Aliases for LOC102724094 Gene

Subcategory (RNA class) for LOC102724094 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC102724094 Gene

  • Uncharacterized LOC102724094 3
  • AC105446.1 5

External Ids for LOC102724094 Gene

Summaries for LOC102724094 Gene

GeneCards Summary for LOC102724094 Gene

LOC102724094 (Uncharacterized LOC102724094) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724094 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724094 Gene

Genomics for LOC102724094 Gene

Regulatory Elements for LOC102724094 Gene

Enhancers for LOC102724094 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H101016 1 ENCODE 10.6 -2.1 -2051 6.5 HDGF PKNOX1 ATF1 FOXA2 ARNT YBX1 ZNF121 GLIS2 ELK1 ZNF143 AP4M1 LOC102724094 ZNF3 PCOLCE ZSCAN21 GIGYF1 MOSPD3 STAG3L5P SAP25 MUC17
GH07H101098 2 FANTOM5 Ensembl ENCODE dbSUPER 4.9 -84.4 -84414 6.4 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 SERPINE1 VGF NAT16 MUC12 MBLAC1 MUC3A MUC17 TRIM56 PCOLCE-AS1 LOC102724094
GH07H100835 1.9 FANTOM5 Ensembl ENCODE dbSUPER 5 +180.8 180773 2.5 PKNOX1 ARNT SIN3A FEZF1 ZNF2 YY1 ZNF766 CBX5 ZNF143 SP3 SRRT TRIM4 ZNF3 GIGYF1 STAG3L5P AP4M1 ENSG00000242798 PPP1R35 MEPCE PILRB
GH07H101093 1.4 Ensembl ENCODE dbSUPER 5 -76.8 -76796 2.4 ATF1 TBL1XR1 ARID4B ZNF2 RAD21 TCF12 ZNF121 ZNF143 FOS ATF7 RN7SL750P RN7SL416P VGF NAT16 TRIP6 ZCWPW1 LOC102724094 GC07P101095 SERPINE1
GH07H100799 1.6 Ensembl ENCODE dbSUPER 4.3 +213.2 213164 10.1 HNRNPUL1 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A YBX1 DMAP1 ZBTB7B GIGYF1 TRIM4 ZNF3 SRRT STAG3L5P PPP1R35 MOSPD3 PCOLCE ENSG00000242798 EPHB4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC102724094 on UCSC Golden Path with GeneCards custom track

Promoters for LOC102724094 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000215885 308 601 HDGF PKNOX1 ATF1 FOXA2 ARNT YBX1 GLIS2 ELK1 FOS ATF7

Genomic Locations for LOC102724094 Gene

Genomic Locations for LOC102724094 Gene
chr7:101,014,320-101,017,608
(GRCh38/hg38)
Size:
3,289 bases
Orientation:
Minus strand
chr7:100,657,601-100,660,889
(GRCh37/hg19)

Genomic View for LOC102724094 Gene

Genes around LOC102724094 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724094 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724094 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724094 Gene

Proteins for LOC102724094 Gene

Post-translational modifications for LOC102724094 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724094 Gene

Domains & Families for LOC102724094 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724094 Gene

Function for LOC102724094 Gene

Phenotypes From GWAS Catalog for LOC102724094 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724094 Gene

Localization for LOC102724094 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724094 Gene

Pathways & Interactions for LOC102724094 Gene

SuperPathways for LOC102724094 Gene

No Data Available

Interacting Proteins for LOC102724094 Gene

Gene Ontology (GO) - Biological Process for LOC102724094 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724094 Gene

Drugs & Compounds for LOC102724094 Gene

No Compound Related Data Available

Transcripts for LOC102724094 Gene

mRNA/cDNA for LOC102724094 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724094 Gene

No ASD Table

Relevant External Links for LOC102724094 Gene

GeneLoc Exon Structure for
LOC102724094

Expression for LOC102724094 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC102724094 Gene

genes like me logo Genes that share expression patterns with LOC102724094: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724094 Gene

Orthologs for LOC102724094 Gene

Evolution for LOC102724094 Gene

ENSEMBL:
Gene Tree for LOC102724094 (if available)
TreeFam:
Gene Tree for LOC102724094 (if available)

No data available for Orthologs for LOC102724094 Gene

Paralogs for LOC102724094 Gene

No data available for Paralogs for LOC102724094 Gene

Variants for LOC102724094 Gene

Sequence variations from dbSNP and Humsavar for LOC102724094 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000056282 -- 101,018,863(+) CCTCG(-/GCACCCCT)GCACC upstream-variant-2KB, utr-variant-3-prime
rs1001071219 -- 101,017,642(+) CTGGA(A/G)ACTGT upstream-variant-2KB, reference, synonymous-codon
rs1001354452 -- 101,019,356(+) CTCAT(A/G)GGACA downstream-variant-500B, upstream-variant-2KB
rs1001408127 -- 101,019,550(+) TTTTT(A/G)TATTT upstream-variant-2KB
rs1001515393 -- 101,017,018(+) GGAGC(C/T)CCCGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724094 Gene

Variant ID Type Subtype PubMed ID
nsv831074 CNV loss 17160897
nsv8 CNV insertion 15895083
nsv5872 CNV insertion 18451855
nsv428181 CNV gain+loss 18775914
esv3614315 CNV loss 21293372
esv3614313 CNV gain 21293372
esv2759547 CNV gain+loss 17122850
esv2734888 CNV deletion 23290073

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC102724094 Gene

Disorders for LOC102724094 Gene

Relevant External Links for LOC102724094

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC102724094

No disorders were found for LOC102724094 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC102724094 Gene

Publications for LOC102724094 Gene

No publications were found for LOC102724094 Gene.

Products for LOC102724094 Gene

Sources for LOC102724094 Gene

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