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Aliases for LOC102724064 Gene

Subcategory (RNA class) for LOC102724064 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC102724064 Gene

  • Uncharacterized LOC102724064 3
  • RP11-867G23.8 5

External Ids for LOC102724064 Gene

Previous GeneCards Identifiers for LOC102724064 Gene

  • GC11U902181
  • GC11P066349
  • GC11P066350
  • GC11P066352
  • GC11P066355
  • GC11P066357

Summaries for LOC102724064 Gene

GeneCards Summary for LOC102724064 Gene

LOC102724064 (Uncharacterized LOC102724064) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724064 Gene

Genomics for LOC102724064 Gene

Regulatory Elements for LOC102724064 Gene

Enhancers for LOC102724064 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G066342 1.8 FANTOM5 ENCODE dbSUPER 11.6 +1.0 1001 11.8 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 RIN1 EIF1AD ENSG00000258297 ACTN3 RAD9A RBM14 KAT5 ENSG00000255320 LOC105369352 CTSF
GH11G066311 1.8 FANTOM5 ENCODE dbSUPER 10.8 -32.2 -32211 8.3 HDGF FOXA2 PKNOX1 MLX CREB3L1 ARNT ZFP64 ARID4B SIN3A DMAP1 RIN1 BRMS1 TMEM151A YIF1A LOC102724064 ENSG00000255320 PACS1 ENSG00000254458 CD248 RBM14
GH11G066333 1.3 ENCODE dbSUPER 8.8 -10.9 -10866 6.2 HDGF PKNOX1 FOXA2 MLX AGO1 ARID4B SIN3A DMAP1 ZBTB7B YY1 RIN1 ACTN3 ENSG00000254458 B4GAT1 LOC105369351 RAB1B LOC105369352 ENSG00000255320 PACS1 BANF1
GH11G067265 1.8 FANTOM5 ENCODE dbSUPER 4.6 +930.9 930921 25.5 CREB3L1 MLX AGO1 ZFP64 DMAP1 YBX1 FEZF1 YY1 SLC30A9 ZNF143 SSH3 ENSG00000258297 GRK2 KDM2A ANKRD13D RBM14 PTPRCAP MRPL11 RHOD CARNS1
GH11G065468 1.5 Ensembl ENCODE dbSUPER 4.5 -878.6 -878640 0.8 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 ZNF48 GLIS2 ZNF143 REST LOC101927789 LOC102724064 GC11M065481
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC102724064 on UCSC Golden Path with GeneCards custom track

Promoters for LOC102724064 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000264488 156 1401 HDGF PKNOX1 CREB3L1 ARNT ZFP64 WRNIP1 ARID4B SIN3A ZNF2 ZNF766

Genomic Location for LOC102724064 Gene

Chromosome:
11
Start:
66,347,544 bp from pter
End:
66,364,804 bp from pter
Size:
17,261 bases
Orientation:
Plus strand

Genomic View for LOC102724064 Gene

Genes around LOC102724064 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724064 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724064 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724064 Gene

Proteins for LOC102724064 Gene

Post-translational modifications for LOC102724064 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724064 Gene

Domains & Families for LOC102724064 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724064 Gene

Function for LOC102724064 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724064 Gene

Localization for LOC102724064 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC102724064 Gene

Pathways & Interactions for LOC102724064 Gene

SuperPathways for LOC102724064 Gene

No Data Available

Interacting Proteins for LOC102724064 Gene

Gene Ontology (GO) - Biological Process for LOC102724064 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724064 Gene

Drugs & Compounds for LOC102724064 Gene

No Compound Related Data Available

Transcripts for LOC102724064 Gene

mRNA/cDNA for LOC102724064 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724064 Gene

No ASD Table

Relevant External Links for LOC102724064 Gene

GeneLoc Exon Structure for
LOC102724064

Expression for LOC102724064 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724064 Gene

Orthologs for LOC102724064 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC102724064 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 100 (a)
OneToOne
Species where no ortholog for LOC102724064 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC102724064 Gene

ENSEMBL:
Gene Tree for LOC102724064 (if available)
TreeFam:
Gene Tree for LOC102724064 (if available)

Paralogs for LOC102724064 Gene

No data available for Paralogs for LOC102724064 Gene

Variants for LOC102724064 Gene

Sequence variations from dbSNP and Humsavar for LOC102724064 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs397509396 Pathogenic 66,346,080(-) GAAGG(C/T)CAAGT upstream-variant-2KB, reference, missense
rs397509397 Pathogenic 66,346,129(-) CTGAA(A/G)ATCAG upstream-variant-2KB, reference, missense
rs730882237 Pathogenic 66,346,724(-) AACGA(-/TT)GCTGG upstream-variant-2KB, reference, frameshift-variant
rs886038575 Likely benign 66,347,188(-) GCCCG(A/C)TGTCC upstream-variant-2KB, reference, missense
rs878853035 Uncertain significance 66,346,230(-) CGAGC(C/T)GCATG upstream-variant-2KB, reference, missense

Variation tolerance for LOC102724064 Gene

Gene Damage Index Score: 0.52; 11.31% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for LOC102724064 Gene

Disorders for LOC102724064 Gene

Relevant External Links for LOC102724064

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC102724064

No disorders were found for LOC102724064 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC102724064 Gene

Publications for LOC102724064 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for LOC102724064 Gene

Sources for LOC102724064 Gene

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