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Aliases for LOC102724058 Gene

Subcategory (RNA class) for LOC102724058 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC102724058 Gene

  • Uncharacterized LOC102724058 3
  • AC010127.1 5

External Ids for LOC102724058 Gene

Previous GeneCards Identifiers for LOC102724058 Gene

  • GC02U902899

Summaries for LOC102724058 Gene

GeneCards Summary for LOC102724058 Gene

LOC102724058 (Uncharacterized LOC102724058) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724058 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724058 Gene

Genomics for LOC102724058 Gene

Regulatory Elements for LOC102724058 Gene

Enhancers for LOC102724058 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H166127 1.1 Ensembl dbSUPER 11.4 +170.3 170289 0 ELF3 FOXA2 NFIB RAD21 ZNF143 ZNF654 ZNF362 MXD4 REST MIER2 SCN1A LOC101929680 LOC102724058 GC02M166126 GC02M166127 GC02M166154 GC02M166148
GH02H166131 1 dbSUPER 11.5 +177.4 177413 6 FOXA2 ATF1 MLX ARID4B DMAP1 ATF7 SP5 REST PPARG KAT8 LOC101929680 LOC102724058 GALNT3 SCN3A GC02M166127 GC02M166126 GC02M166154 GC02M166148
GH02H166125 0.9 FANTOM5 dbSUPER 11.4 +168.8 168786 0 GATAD2A TFAP4 STAT1 SAP130 TEAD1 HLF CEBPB CEBPG TEAD3 NFIL3 SCN1A LOC102724058 LOC101929680 GC02M166127 GC02M166126 GC02M166124
GH02H166034 0.3 FANTOM5 11.4 +76.9 76919 0 SCN1A LOC101929680 LOC102724058 TTC21B GC02M166073
GH02H165952 1.1 ENCODE 0.7 -3.3 -3340 3 HDGF FOXA2 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 GALNT3 LOC101929680 LOC102724058 TTC21B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC102724058 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC102724058 Gene

Chromosome:
2
Start:
165,957,399 bp from pter
End:
166,301,784 bp from pter
Size:
344,386 bases
Orientation:
Plus strand

Genomic View for LOC102724058 Gene

Genes around LOC102724058 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724058 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724058 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724058 Gene

Proteins for LOC102724058 Gene

Post-translational modifications for LOC102724058 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724058 Gene

Domains & Families for LOC102724058 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724058 Gene

Function for LOC102724058 Gene

Phenotypes From GWAS Catalog for LOC102724058 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724058 Gene

Localization for LOC102724058 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724058 Gene

Pathways & Interactions for LOC102724058 Gene

SuperPathways for LOC102724058 Gene

No Data Available

Interacting Proteins for LOC102724058 Gene

Gene Ontology (GO) - Biological Process for LOC102724058 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724058 Gene

Drugs & Compounds for LOC102724058 Gene

No Compound Related Data Available

Transcripts for LOC102724058 Gene

mRNA/cDNA for LOC102724058 Gene

(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724058 Gene

No ASD Table

Relevant External Links for LOC102724058 Gene

GeneLoc Exon Structure for
LOC102724058

Expression for LOC102724058 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724058 Gene

Orthologs for LOC102724058 Gene

Evolution for LOC102724058 Gene

ENSEMBL:
Gene Tree for LOC102724058 (if available)
TreeFam:
Gene Tree for LOC102724058 (if available)

No data available for Orthologs for LOC102724058 Gene

Paralogs for LOC102724058 Gene

No data available for Paralogs for LOC102724058 Gene

Variants for LOC102724058 Gene

Sequence variations from dbSNP and Humsavar for LOC102724058 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1057518229 Pathogenic 166,009,823(-) GTTTA(-/A)CAGCA intron-variant, nc-transcript-variant, reference, frameshift-variant
rs1057519532 Pathogenic 165,994,177(-) TATTT(-/TT)GATTT intron-variant, nc-transcript-variant, reference, frameshift-variant
rs1057519534 Pathogenic 166,013,758(-) TCCTT(-/T)AGTAG intron-variant, nc-transcript-variant, reference, frameshift-variant
rs121917908 Pathogenic 165,999,764(-) TCAAA(A/C/G)GATGG intron-variant, nc-transcript-variant, reference, missense
rs121917912 Pathogenic 166,012,254(-) TCAGC(A/G)AAAGA intron-variant, nc-transcript-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for LOC102724058 Gene

Variant ID Type Subtype PubMed ID
dgv2085n106 CNV deletion 24896259
dgv63n17 CNV loss 16327808
nsv1149312 CNV insertion 26484159
nsv834445 CNV gain+loss 17160897
nsv961904 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC102724058 Gene

Disorders for LOC102724058 Gene

Relevant External Links for LOC102724058

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC102724058

No disorders were found for LOC102724058 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC102724058 Gene

Publications for LOC102724058 Gene

  1. Genetic determinants of common epilepsies: a meta-analysis of genome-wide association studies. (PMID: 25087078) International League Against Epilepsy Consortium on Complex Epilepsies. Electronic address: epilepsy-austin@unimelb.edu.au (The Lancet. Neurology 2014) 3 60

Products for LOC102724058 Gene

Sources for LOC102724058 Gene

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