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Aliases for LOC102724030 Gene

Subcategory (RNA class) for LOC102724030 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC102724030 Gene

  • Uncharacterized LOC102724030 3
  • AC023794.1 5

External Ids for LOC102724030 Gene

Previous GeneCards Identifiers for LOC102724030 Gene

  • GC12U901941

Summaries for LOC102724030 Gene

GeneCards Summary for LOC102724030 Gene

LOC102724030 (Uncharacterized LOC102724030) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724030 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724030 Gene

Genomics for LOC102724030 Gene

Regulatory Elements for LOC102724030 Gene

Enhancers for LOC102724030 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H054195 1.5 FANTOM5 Ensembl ENCODE 11.6 +46.5 46457 3 HDGF PKNOX1 TBL1XR1 KLF17 ZNF121 GLIS2 ZNF366 SMARCC2 FOS KLF7 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5 LOC102724030
GH12H054191 1.2 Ensembl ENCODE 11.6 +41.5 41519 0 ATF1 ARID4B SIN3A ZNF2 ZNF143 KLF7 ATF7 DEK SP3 YY2 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR615 HOXC4 HOXC5 MAP3K12 LOC102724030
GH12H054051 1.1 ENCODE 10.9 -96.7 -96702 4 HDGF PKNOX1 ARNT FEZF1 ZNF2 ZNF143 SP3 JUNB ZNF610 ZSCAN16 AAAS ATF7 RARG CBX5 HNRNPA1 ENSG00000260470 LOC105378250 PCBP2 SP1 HOTAIR
GH12H054188 1 ENCODE 11.6 +38.9 38887 1 PKNOX1 ATF1 ARNT ARID4B SIN3A ETS1 ZNF766 GLIS2 GATA2 ELK1 FLJ12825 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 ENSG00000257605 MIR615 HOXC4 HOXC5
GH12H054201 0.8 ENCODE 11.3 +51.3 51293 0 PTBP1 RB1 RAD21 RFX5 ZNF143 RCOR1 ATF7 RUNX3 CREM DEK HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5 HOXC-AS3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC102724030 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC102724030 Gene

Chromosome:
12
Start:
54,150,219 bp from pter
End:
54,168,595 bp from pter
Size:
18,377 bases
Orientation:
Plus strand

Genomic View for LOC102724030 Gene

Genes around LOC102724030 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724030 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724030 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724030 Gene

Proteins for LOC102724030 Gene

Post-translational modifications for LOC102724030 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724030 Gene

Domains & Families for LOC102724030 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724030 Gene

Function for LOC102724030 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724030 Gene

Localization for LOC102724030 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724030 Gene

Pathways & Interactions for LOC102724030 Gene

SuperPathways for LOC102724030 Gene

No Data Available

Interacting Proteins for LOC102724030 Gene

Gene Ontology (GO) - Biological Process for LOC102724030 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724030 Gene

Drugs & Compounds for LOC102724030 Gene

No Compound Related Data Available

Transcripts for LOC102724030 Gene

mRNA/cDNA for LOC102724030 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724030 Gene

No ASD Table

Relevant External Links for LOC102724030 Gene

GeneLoc Exon Structure for
LOC102724030

Expression for LOC102724030 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC102724030 Gene

genes like me logo Genes that share expression patterns with LOC102724030: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724030 Gene

Orthologs for LOC102724030 Gene

Evolution for LOC102724030 Gene

ENSEMBL:
Gene Tree for LOC102724030 (if available)
TreeFam:
Gene Tree for LOC102724030 (if available)

No data available for Orthologs for LOC102724030 Gene

Paralogs for LOC102724030 Gene

No data available for Paralogs for LOC102724030 Gene

Variants for LOC102724030 Gene

Sequence variations from dbSNP and Humsavar for LOC102724030 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000015027 -- 54,149,034(+) CCTTC(C/T)CCAGT upstream-variant-2KB
rs1000031789 -- 54,155,732(+) TGAGG(C/T)AAGTG intron-variant
rs1000082078 -- 54,155,420(+) AGTGG(G/T)CAGGG intron-variant
rs1000280756 -- 54,160,640(+) CCCAA(A/C)AGTGA intron-variant
rs1000472926 -- 54,148,751(+) CTGGC(C/T)ACTCC upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC102724030 Gene

Disorders for LOC102724030 Gene

No disorders were found for LOC102724030 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724030 Gene

Publications for LOC102724030 Gene

No publications were found for LOC102724030 Gene.

Products for LOC102724030 Gene

Sources for LOC102724030 Gene

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