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Aliases for LOC101929516 Gene

Subcategory (RNA class) for LOC101929516 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101929516 Gene

  • Uncharacterized LOC101929516 3
  • AL365277.2 5

External Ids for LOC101929516 Gene

Previous GeneCards Identifiers for LOC101929516 Gene

  • GC01U903914

Summaries for LOC101929516 Gene

GeneCards Summary for LOC101929516 Gene

LOC101929516 (Uncharacterized LOC101929516) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101929516 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101929516 Gene

Genomics for LOC101929516 Gene

Regulatory Elements for LOC101929516 Gene

Enhancers for LOC101929516 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H038872 1.1 ENCODE 23.1 -691.8 -691802 2.3 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 GLI4 YY1 ETS1 ZNF121 SF3A3 PPIE MYCBP LOC101929516 INPP5B SNORA55 PPIEL AKIRIN1 PABPC4 RHBDL2
GH01H039391 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -168.8 -168832 10.2 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A YY1 ZNF766 FOS DEK LOC101929516 PPIEL SNORA55 PABPC4 OXCT2P1 KIAA0754 MACF1 BMP8A BMP8B PIR47449
GH01H040372 1.8 FANTOM5 ENCODE dbSUPER 10.6 +810.8 810783 5.9 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9 ZNF766 PPIEL PPIE TRIT1 EXO5 SMAP2 ENSG00000259943 ENSG00000182109 RLF NFYC-AS1 LOC105378674
GH01H039212 1.3 ENCODE dbSUPER 13.2 -350.1 -350083 5.8 HDGF PKNOX1 FOXA2 ARNT SIN3A ARID4B TCF12 GTF3C2 GATA2 FOS ENSG00000182109 PPIE MYCBP LOC101929516 TRIT1 ENSG00000226438 OXCT2P1 SNORA55 MACF1 ENSG00000270040
GH01H039076 1.2 Ensembl ENCODE dbSUPER 14.2 -488.5 -488506 1.1 NFIA CEBPB RAD21 NR2F2 FOSL1 NFIC JUND HSF1 IKZF1 CREB1 LOC101929516 NDUFS5 MYCBP PPIE SNORA55 PABPC4 KIAA0754 MACF1 GC01P039070
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101929516 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101929516 Gene

Genomic Locations for LOC101929516 Gene
chr1:39,565,070-39,573,203
(GRCh38/hg38)
Size:
8,134 bases
Orientation:
Plus strand
chr1:40,030,832-40,038,875
(GRCh37/hg19)

Genomic View for LOC101929516 Gene

Genes around LOC101929516 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929516 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929516 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929516 Gene

Proteins for LOC101929516 Gene

Post-translational modifications for LOC101929516 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929516 Gene

Domains & Families for LOC101929516 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101929516 Gene

Function for LOC101929516 Gene

Phenotypes From GWAS Catalog for LOC101929516 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929516 Gene

Localization for LOC101929516 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929516 Gene

Pathways & Interactions for LOC101929516 Gene

SuperPathways for LOC101929516 Gene

No Data Available

Interacting Proteins for LOC101929516 Gene

Gene Ontology (GO) - Biological Process for LOC101929516 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929516 Gene

Drugs & Compounds for LOC101929516 Gene

No Compound Related Data Available

Transcripts for LOC101929516 Gene

mRNA/cDNA for LOC101929516 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929516 Gene

No ASD Table

Relevant External Links for LOC101929516 Gene

GeneLoc Exon Structure for
LOC101929516

Expression for LOC101929516 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101929516 Gene

genes like me logo Genes that share expression patterns with LOC101929516: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929516 Gene

Orthologs for LOC101929516 Gene

Evolution for LOC101929516 Gene

ENSEMBL:
Gene Tree for LOC101929516 (if available)
TreeFam:
Gene Tree for LOC101929516 (if available)

No data available for Orthologs for LOC101929516 Gene

Paralogs for LOC101929516 Gene

No data available for Paralogs for LOC101929516 Gene

Variants for LOC101929516 Gene

Sequence variations from dbSNP and Humsavar for LOC101929516 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000057139 -- 39,570,119(+) CCCAT(-/CCA)CCACC intron-variant
rs1000078619 -- 39,564,646(+) GACAG(A/G)TATAT intron-variant, upstream-variant-2KB
rs1000385134 -- 39,565,276(+) GGAGC(A/C)CACAA intron-variant, reference, missense
rs1000693709 -- 39,564,037(+) GGCCA(C/T)TACTA intron-variant, upstream-variant-2KB
rs1000820414 -- 39,563,786(+) GGGCA(A/G)AGACC intron-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC101929516 Gene

Disorders for LOC101929516 Gene

Relevant External Links for LOC101929516

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101929516

No disorders were found for LOC101929516 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101929516 Gene

Publications for LOC101929516 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for LOC101929516 Gene

Sources for LOC101929516 Gene

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