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Aliases for LOC101929054 Gene

Subcategory (RNA class) for LOC101929054 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101929054 Gene

  • Uncharacterized LOC101929054 3
  • AC006252.1 5

External Ids for LOC101929054 Gene

Previous GeneCards Identifiers for LOC101929054 Gene

  • GC03U902008

Summaries for LOC101929054 Gene

GeneCards Summary for LOC101929054 Gene

LOC101929054 (Uncharacterized LOC101929054) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101929054 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101929054 Gene

Genomics for LOC101929054 Gene

Regulatory Elements for LOC101929054 Gene

Enhancers for LOC101929054 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H052274 1.7 Ensembl ENCODE dbSUPER 28.2 +43.6 43597 17 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 PBRM1 LOC101929054 PPM1M TWF2 ITIH4 GLYCTK RRP9 RFT1 RAD54L2 DCAF1
GH03H052236 1.7 FANTOM5 ENCODE dbSUPER 17.3 -0.5 -470 5 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 GLYCTK RAD54L2 PBRM1 RRP9 LOC101929054 WDR82 RFT1 MIR135A1 GLYCTK-AS1 ABHD14B
GH03H052243 1.6 FANTOM5 ENCODE dbSUPER 16.7 +6.6 6628 4 HDGF PKNOX1 SIN3A YY1 GLIS2 ZNF143 FOS ATF7 RUNX3 SP3 PBRM1 PPM1M LOC101929054 GLYCTK IQCF2 IQCF5 PHF7 IQCF6 IQCF1 WDR82
GH03H052251 1.7 FANTOM5 Ensembl ENCODE dbSUPER 15.6 +14.1 14147 3 HDGF PKNOX1 SIN3A ZNF121 ATF7 ETV6 RUNX3 CREM IKZF2 EGR2 GLYCTK PBRM1 PPM1M LOC101929054 NT5DC2 WDR82 NISCH PIR61179 GC03M052258 GC03M052257
GH03H052210 1.5 Ensembl ENCODE dbSUPER 13 -28.2 -28163 2 FOXA2 ATF1 MLX ARID4B DMAP1 YY1 SLC30A9 FOS ATF7 SP5 DCAF1 ENSG00000173366 TWF2 LOC101929054 PPM1M WDR82 MIR135A1 GLYCTK-AS1 GLYCTK POC1A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101929054 on UCSC Golden Path with GeneCards custom track

Promoters for LOC101929054 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000152518 -58 1201 HDGF PKNOX1 FOXA2 ZFP64 ZNF133 ARID4B SIN3A DMAP1 GLI4 ZNF2

Genomic Location for LOC101929054 Gene

Chromosome:
3
Start:
52,239,258 bp from pter
End:
52,241,097 bp from pter
Size:
1,840 bases
Orientation:
Plus strand

Genomic View for LOC101929054 Gene

Genes around LOC101929054 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101929054 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101929054 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101929054 Gene

Proteins for LOC101929054 Gene

Post-translational modifications for LOC101929054 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101929054 Gene

Domains & Families for LOC101929054 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101929054 Gene

Function for LOC101929054 Gene

Phenotypes From GWAS Catalog for LOC101929054 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101929054 Gene

Localization for LOC101929054 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101929054 Gene

Pathways & Interactions for LOC101929054 Gene

SuperPathways for LOC101929054 Gene

No Data Available

Interacting Proteins for LOC101929054 Gene

Gene Ontology (GO) - Biological Process for LOC101929054 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101929054 Gene

Drugs & Compounds for LOC101929054 Gene

No Compound Related Data Available

Transcripts for LOC101929054 Gene

mRNA/cDNA for LOC101929054 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101929054 Gene

No ASD Table

Relevant External Links for LOC101929054 Gene

GeneLoc Exon Structure for
LOC101929054

Expression for LOC101929054 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101929054 Gene

genes like me logo Genes that share expression patterns with LOC101929054: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101929054 Gene

Orthologs for LOC101929054 Gene

Evolution for LOC101929054 Gene

ENSEMBL:
Gene Tree for LOC101929054 (if available)
TreeFam:
Gene Tree for LOC101929054 (if available)

No data available for Orthologs for LOC101929054 Gene

Paralogs for LOC101929054 Gene

No data available for Paralogs for LOC101929054 Gene

Variants for LOC101929054 Gene

Sequence variations from dbSNP and Humsavar for LOC101929054 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1002013580 -- 52,238,993(+) TCACC(A/G)TGGAT upstream-variant-2KB, reference, synonymous-codon
rs1002364426 -- 52,238,817(+) CTATG(C/G)ACACC intron-variant, upstream-variant-2KB
rs1002505685 -- 52,237,532(+) GTCTC(A/T)CTATG intron-variant, upstream-variant-2KB
rs1002557991 -- 52,237,940(+) GCAAA(C/T)AGCCC intron-variant, upstream-variant-2KB
rs1003632389 -- 52,239,963(+) GTTGG(C/T)CAGTC intron-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC101929054 Gene

Disorders for LOC101929054 Gene

Relevant External Links for LOC101929054

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101929054

No disorders were found for LOC101929054 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101929054 Gene

Publications for LOC101929054 Gene

  1. Genome-wide association study meta-analysis of European and Asian-ancestry samples identifies three novel loci associated with bipolar disorder. (PMID: 22182935) Chen DT … Strauss J (Molecular psychiatry 2013) 3 60

Products for LOC101929054 Gene

Sources for LOC101929054 Gene

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