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Aliases for LOC101928809 Gene

Subcategory (RNA class) for LOC101928809 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101928809 Gene

  • Uncharacterized LOC101928809 3
  • RP11-630D6.5 5

External Ids for LOC101928809 Gene

Previous GeneCards Identifiers for LOC101928809 Gene

  • GC04U901677

Summaries for LOC101928809 Gene

GeneCards Summary for LOC101928809 Gene

LOC101928809 (Uncharacterized LOC101928809) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928809 Gene

Genomics for LOC101928809 Gene

Regulatory Elements for LOC101928809 Gene

Enhancers for LOC101928809 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G076059 1.1 FANTOM5 ENCODE 11.4 +79.2 79186 1.2 ATF1 NR2F1 ZNF175 ZNF384 ZBTB40 ZGPAT NCOR1 ZNF512 IKZF1 CREB1 ART3 CXCL10 CXCL9 NAAA CXCL11 SDAD1 LOC101928809 GC04P076101
GH04G076072 0.8 ENCODE 11 +92.2 92211 1.4 TEAD4 ASH2L BACH1 ZBTB40 CBX5 POLR2A EED ETV6 RELB IKZF2 ART3 CXCL9 SDAD1 CXCL10 LOC101928809 PPEF2 GC04P076101 CXCL11
GH04G075989 1.1 ENCODE 0.4 +9.8 9768 2.1 PKNOX1 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF766 CBX5 NAAA SCARB2 ART3 SDAD1 LOC101928809
GH04G075984 0.5 ENCODE 0.7 +4.6 4621 1.8 FOS MAFK NFE2L2 NAAA ART3 LOC101928809 SDAD1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101928809 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC101928809 Gene

Chromosome:
4
Start:
75,980,790 bp from pter
End:
76,005,942 bp from pter
Size:
25,153 bases
Orientation:
Plus strand

Genomic View for LOC101928809 Gene

Genes around LOC101928809 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928809 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928809 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928809 Gene

Proteins for LOC101928809 Gene

Post-translational modifications for LOC101928809 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928809 Gene

Domains & Families for LOC101928809 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928809 Gene

Function for LOC101928809 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928809 Gene

Localization for LOC101928809 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC101928809 Gene

Pathways & Interactions for LOC101928809 Gene

SuperPathways for LOC101928809 Gene

No Data Available

Interacting Proteins for LOC101928809 Gene

Gene Ontology (GO) - Biological Process for LOC101928809 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928809 Gene

Drugs & Compounds for LOC101928809 Gene

No Compound Related Data Available

Transcripts for LOC101928809 Gene

mRNA/cDNA for LOC101928809 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928809 Gene

No ASD Table

Relevant External Links for LOC101928809 Gene

GeneLoc Exon Structure for
LOC101928809

Expression for LOC101928809 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928809 Gene

genes like me logo Genes that share expression patterns with LOC101928809: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928809 Gene

Orthologs for LOC101928809 Gene

Evolution for LOC101928809 Gene

ENSEMBL:
Gene Tree for LOC101928809 (if available)
TreeFam:
Gene Tree for LOC101928809 (if available)

No data available for Orthologs for LOC101928809 Gene

Paralogs for LOC101928809 Gene

No data available for Paralogs for LOC101928809 Gene

Variants for LOC101928809 Gene

Sequence variations from dbSNP and Humsavar for LOC101928809 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000045547 -- 75,996,198(+) CCTGC(C/T)TCAGC nc-transcript-variant
rs1000242925 -- 75,991,061(+) TCTGT(A/G/T)GTGTA intron-variant, upstream-variant-2KB
rs1000322121 -- 75,978,985(+) CAGAA(A/G)AAAAA intron-variant, upstream-variant-2KB
rs1000342455 -- 75,997,686(+) ACTCC(A/G)CCTCC intron-variant
rs1000420232 -- 75,994,994(+) CTGCG(A/C)CCCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928809 Gene

Variant ID Type Subtype PubMed ID
esv3449791 CNV insertion 20981092
nsv7363 OTHER inversion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC101928809 Gene

Disorders for LOC101928809 Gene

Relevant External Links for LOC101928809

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101928809

No disorders were found for LOC101928809 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928809 Gene

Publications for LOC101928809 Gene

No publications were found for LOC101928809 Gene.

Products for LOC101928809 Gene

Sources for LOC101928809 Gene

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