Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC101928438 Gene

Subcategory (RNA class) for LOC101928438 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101928438 Gene

  • Uncharacterized LOC101928438 3
  • AL359710.1 5

External Ids for LOC101928438 Gene

Previous GeneCards Identifiers for LOC101928438 Gene

  • GC09U901977

Summaries for LOC101928438 Gene

GeneCards Summary for LOC101928438 Gene

LOC101928438 (Uncharacterized LOC101928438) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928438 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928438 Gene

Genomics for LOC101928438 Gene

Regulatory Elements for LOC101928438 Gene

Enhancers for LOC101928438 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H099905 1.1 ENCODE 10.9 -87.2 -87186 2.4 HDGF ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 ZNF207 FOS STX17 LOC101928438 NR4A3 TEX10 INVS ENSG00000254571
GH09H100209 1 Ensembl ENCODE 10.3 -390.4 -390375 1 HDAC1 TBP PKNOX1 ATF1 IRF2 ARNT BATF MTA3 POLR2A GATA2 INVS STX17 RN7SL75P ERP44 NR4A3 LOC101928438 MSANTD3 MSANTD3-TMEFF1 TMEFF1 GC09P100176
GH09H099851 0.7 ENCODE 10.7 -31.6 -31557 0.7 E2F4 DPF2 BATF RELA IKZF1 TARDBP EED NBN ZNF24 RUNX3 NR4A3 LOC101928438 GC09P099825 STX17-AS1
GH09H100213 0.6 ENCODE 10.2 -394.0 -394018 1.1 HDAC1 PKNOX1 TAL1 DPF2 TCF12 JUND KLF16 SMARCA4 NCOR1 GATA2 INVS STX17 ERP44 RN7SL75P LOC101928438 NR4A3 MSANTD3-TMEFF1 MSANTD3 TMEFF1 GC09P100176
GH09H099785 0.5 ENCODE 11 +36.7 36673 0.4 POLR2A MAX MYC SPI1 LOC101928438 NR4A3 GC09M099818 ENSG00000234860
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101928438 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928438 Gene

Genomic Locations for LOC101928438 Gene
chr9:99,585,786-99,819,889
(GRCh38/hg38)
Size:
234,104 bases
Orientation:
Minus strand
chr9:102,348,068-102,582,171
(GRCh37/hg19)

Genomic View for LOC101928438 Gene

Genes around LOC101928438 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928438 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928438 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928438 Gene

Proteins for LOC101928438 Gene

Post-translational modifications for LOC101928438 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928438 Gene

Domains & Families for LOC101928438 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928438 Gene

Function for LOC101928438 Gene

Phenotypes From GWAS Catalog for LOC101928438 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928438 Gene

Localization for LOC101928438 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928438 Gene

Pathways & Interactions for LOC101928438 Gene

SuperPathways for LOC101928438 Gene

No Data Available

Interacting Proteins for LOC101928438 Gene

Gene Ontology (GO) - Biological Process for LOC101928438 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928438 Gene

Drugs & Compounds for LOC101928438 Gene

No Compound Related Data Available

Transcripts for LOC101928438 Gene

mRNA/cDNA for LOC101928438 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928438 Gene

No ASD Table

Relevant External Links for LOC101928438 Gene

GeneLoc Exon Structure for
LOC101928438

Expression for LOC101928438 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928438 Gene

genes like me logo Genes that share expression patterns with LOC101928438: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928438 Gene

Orthologs for LOC101928438 Gene

Evolution for LOC101928438 Gene

ENSEMBL:
Gene Tree for LOC101928438 (if available)
TreeFam:
Gene Tree for LOC101928438 (if available)

No data available for Orthologs for LOC101928438 Gene

Paralogs for LOC101928438 Gene

No data available for Paralogs for LOC101928438 Gene

Variants for LOC101928438 Gene

Sequence variations from dbSNP and Humsavar for LOC101928438 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000009428 -- 99,716,700(+) CAGAA(C/T)GGGAG intron-variant
rs1000050399 -- 99,755,033(+) TGTCA(A/G)ATAAG intron-variant
rs1000061850 -- 99,734,003(+) CACTG(C/T)AGTTC intron-variant
rs1000065612 -- 99,703,499(+) ATGAG(A/G)GACAT intron-variant
rs1000074729 -- 99,601,762(+) CCCAA(A/C)GAACC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928438 Gene

Variant ID Type Subtype PubMed ID
nsv831668 CNV gain+loss 17160897
nsv528025 CNV gain 19592680
nsv522018 CNV loss 19592680
nsv473813 CNV novel sequence insertion 20440878
esv3621225 CNV loss 21293372
esv3621223 CNV loss 21293372
esv3621214 CNV gain 21293372
esv3378624 CNV insertion 20981092
esv3356405 CNV insertion 20981092
esv3304462 CNV mobile element insertion 20981092

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC101928438 Gene

Disorders for LOC101928438 Gene

Relevant External Links for LOC101928438

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101928438

No disorders were found for LOC101928438 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928438 Gene

Publications for LOC101928438 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for LOC101928438 Gene

Sources for LOC101928438 Gene

Content
Loading form....