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Aliases for LOC101928404 Gene

Subcategory (RNA class) for LOC101928404 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101928404 Gene

  • Uncharacterized LOC101928404 3
  • AL499616.1 5

External Ids for LOC101928404 Gene

Previous GeneCards Identifiers for LOC101928404 Gene

  • GC01U903865

Summaries for LOC101928404 Gene

GeneCards Summary for LOC101928404 Gene

LOC101928404 (Uncharacterized LOC101928404) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101928404 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928404 Gene

Genomics for LOC101928404 Gene

Regulatory Elements for LOC101928404 Gene

Enhancers for LOC101928404 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H162872 1.3 Ensembl ENCODE dbSUPER 10.6 -287.7 -287652 2 ELF3 FOXA2 RAD21 RARA YY1 FOS MIXL1 HMG20B ZNF217 NFIL3 LOC101928404 RGS4 CCDC190 ENSG00000227667
GH01H163320 1.2 ENCODE 9.5 +160.5 160485 3 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC ZC3H11A ENSG00000272574 NUF2 DDR2 RGS4 UAP1 LOC101928404 ENSG00000232995 LOC100422212
GH01H163195 0.7 ENCODE 11.5 +34.8 34815 1 HDAC1 JUN ZMYM3 FOSL1 CCNT2 GATA2 RCOR1 NFE2 TCF7L2 SMARCE1 LOC101928404 RGS5 NUF2 ENSG00000232995 LOC100113374
GH01H163201 0.7 Ensembl ENCODE 11.2 +41.2 41169 2 POLR2A RCOR1 LOC101928404 RGS4 ENSG00000232995 LOC100113374
GH01H162846 0.7 ENCODE 11.2 -314.8 -314785 0 STAT1 CEBPB DPF2 FOXA1 ZNF217 E2F1 CTBP1 GATA3 IKZF1 FOS LOC101928404 ENSG00000272574 CCDC190 ENSG00000230739
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101928404 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC101928404 Gene

Chromosome:
1
Start:
163,161,675 bp from pter
End:
163,213,023 bp from pter
Size:
51,349 bases
Orientation:
Plus strand

Genomic View for LOC101928404 Gene

Genes around LOC101928404 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928404 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928404 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928404 Gene

Proteins for LOC101928404 Gene

Post-translational modifications for LOC101928404 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928404 Gene

Domains & Families for LOC101928404 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928404 Gene

Function for LOC101928404 Gene

Phenotypes From GWAS Catalog for LOC101928404 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928404 Gene

Localization for LOC101928404 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928404 Gene

Pathways & Interactions for LOC101928404 Gene

SuperPathways for LOC101928404 Gene

No Data Available

Interacting Proteins for LOC101928404 Gene

Gene Ontology (GO) - Biological Process for LOC101928404 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928404 Gene

Drugs & Compounds for LOC101928404 Gene

No Compound Related Data Available

Transcripts for LOC101928404 Gene

mRNA/cDNA for LOC101928404 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928404 Gene

No ASD Table

Relevant External Links for LOC101928404 Gene

GeneLoc Exon Structure for
LOC101928404

Expression for LOC101928404 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928404 Gene

genes like me logo Genes that share expression patterns with LOC101928404: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928404 Gene

Orthologs for LOC101928404 Gene

Evolution for LOC101928404 Gene

ENSEMBL:
Gene Tree for LOC101928404 (if available)
TreeFam:
Gene Tree for LOC101928404 (if available)

No data available for Orthologs for LOC101928404 Gene

Paralogs for LOC101928404 Gene

No data available for Paralogs for LOC101928404 Gene

Variants for LOC101928404 Gene

Sequence variations from dbSNP and Humsavar for LOC101928404 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000018021 -- 163,170,025(+) TTTTA(A/T)AACTA intron-variant
rs1000032625 -- 163,184,705(+) AATCA(A/G)ACAGA intron-variant
rs1000310323 -- 163,191,559(+) TGAGT(A/G)CGTTT intron-variant
rs1000345850 -- 163,197,690(+) TTCAT(C/T)CACTT intron-variant
rs1000392417 -- 163,204,722(+) ATTAA(A/T)TATCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LOC101928404 Gene

Variant ID Type Subtype PubMed ID
esv3890704 CNV loss 25118596
nsv1137820 CNV deletion 24896259

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC101928404 Gene

Disorders for LOC101928404 Gene

Relevant External Links for LOC101928404

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101928404

No disorders were found for LOC101928404 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928404 Gene

Publications for LOC101928404 Gene

  1. Genome-wide association study of liver enzymes in korean children. (PMID: 24124411) Park TJ … Lee JY (Genomics & informatics 2013) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for LOC101928404 Gene

Sources for LOC101928404 Gene

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