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Aliases for LOC101928120 Gene

Subcategory (RNA class) for LOC101928120 Gene

antisense

Aliases for LOC101928120 Gene

  • Uncharacterized LOC101928120 3
  • AL451085.2 5

External Ids for LOC101928120 Gene

ORGUL Members for LOC101928120 Gene

Previous GeneCards Identifiers for LOC101928120 Gene

  • GC01U903935

Summaries for LOC101928120 Gene

GeneCards Summary for LOC101928120 Gene

LOC101928120 (Uncharacterized LOC101928120) is a Protein Coding gene, and is affiliated with the antisense RNA class.

Additional gene information for LOC101928120 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928120 Gene

Genomics for LOC101928120 Gene

Regulatory Elements for LOC101928120 Gene

Enhancers for LOC101928120 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H155242 1.5 ENCODE dbSUPER 73.6 +282.7 282683 2 FEZF1 YBX1 YY1 ZNF416 ZNF143 ZNF548 SP3 ZFP41 MEF2D ZNF610 KIAA0907 GON4L ENSG00000271267 CLK2 MSTO1 MSTO2P THBS3 RUSC1-AS1 LOC101928120 SHC1
GH01H155222 1.4 ENCODE dbSUPER 45.4 +264.2 264171 5 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 KIAA0907 MSTO1 ENSG00000271267 MSTO2P GON4L CLK2 LOC101928120 THBS3 RUSC1-AS1 GBAP1
GH01H155015 1.7 Ensembl ENCODE dbSUPER 34.4 +55.8 55755 3 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 GON4L KIAA0907 UBAP2L ENSG00000271267 CLK2 MSTO1 LOC101928120 MSTO2P THBS3 PYGO2
GH01H155930 1.4 ENCODE dbSUPER 37 +971.3 971331 5 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 GON4L RRNAD1 KIAA0907 ISG20L2 LOC101928120 CCT3 MSTO2P MSTO1 THBS3 CLK2
GH01H155123 1.7 FANTOM5 ENCODE dbSUPER 29.7 +166.5 166463 8 PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 KIAA0907 GON4L CLK2 UBAP2L MSTO1 ENSG00000271267 MSTO2P LOC101928120 RUSC1-AS1 SHC1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101928120 on UCSC Golden Path with GeneCards custom track

Promoters for LOC101928120 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000014005 240 1601 PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 ZNF143 ZNF207 PAF1 SP3

Genomic Location for LOC101928120 Gene

Chromosome:
1
Start:
154,961,560 bp from pter
End:
154,962,625 bp from pter
Size:
1,066 bases
Orientation:
Plus strand

Genomic View for LOC101928120 Gene

Genes around LOC101928120 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928120 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928120 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928120 Gene

Proteins for LOC101928120 Gene

Post-translational modifications for LOC101928120 Gene

No Post-translational modifications

Other Protein References for LOC101928120 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC101928120 Gene

Domains & Families for LOC101928120 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928120 Gene

Function for LOC101928120 Gene

Phenotypes From GWAS Catalog for LOC101928120 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928120 Gene

Localization for LOC101928120 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928120 Gene

Pathways & Interactions for LOC101928120 Gene

SuperPathways for LOC101928120 Gene

No Data Available

Interacting Proteins for LOC101928120 Gene

Gene Ontology (GO) - Biological Process for LOC101928120 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928120 Gene

Drugs & Compounds for LOC101928120 Gene

No Compound Related Data Available

Transcripts for LOC101928120 Gene

mRNA/cDNA for LOC101928120 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928120 Gene

No ASD Table

Relevant External Links for LOC101928120 Gene

GeneLoc Exon Structure for
LOC101928120

Expression for LOC101928120 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928120 Gene

Orthologs for LOC101928120 Gene

Evolution for LOC101928120 Gene

ENSEMBL:
Gene Tree for LOC101928120 (if available)
TreeFam:
Gene Tree for LOC101928120 (if available)

No data available for Orthologs for LOC101928120 Gene

Paralogs for LOC101928120 Gene

No data available for Paralogs for LOC101928120 Gene

Variants for LOC101928120 Gene

Sequence variations from dbSNP and Humsavar for LOC101928120 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000899186 -- 154,961,435(+) AAGTC(C/T)TGGGC intron-variant, upstream-variant-2KB
rs1001725976 -- 154,962,347(+) AGTGA(C/G)ACCCG upstream-variant-2KB, utr-variant-3-prime
rs1001778390 -- 154,962,488(+) AGAAG(G/T)TACTC upstream-variant-2KB, utr-variant-3-prime
rs1002104060 -- 154,961,741(+) GCTCT(C/T)TCCAG reference, synonymous-codon, utr-variant-5-prime
rs1002453132 -- 154,961,792(+) CTCGT(C/T)GCGGC upstream-variant-2KB, reference, synonymous-codon

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC101928120 Gene

Disorders for LOC101928120 Gene

Relevant External Links for LOC101928120

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101928120

No disorders were found for LOC101928120 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928120 Gene

Publications for LOC101928120 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3 60

Products for LOC101928120 Gene

Sources for LOC101928120 Gene

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