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Aliases for LOC101928100 Gene

Subcategory (RNA class) for LOC101928100 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101928100 Gene

  • Uncharacterized LOC101928100 3
  • RP11-277P12.20 5

External Ids for LOC101928100 Gene

Previous GeneCards Identifiers for LOC101928100 Gene

  • GC12U901777

Summaries for LOC101928100 Gene

GeneCards Summary for LOC101928100 Gene

LOC101928100 (Uncharacterized LOC101928100) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928100 Gene

Genomics for LOC101928100 Gene

Regulatory Elements for LOC101928100 Gene

Enhancers for LOC101928100 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G010360 1.6 FANTOM5 ENCODE dbSUPER 18.7 +0.5 471 7.3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 CBX5 ZNF143 ZNF263 KLRA1P LOC101928100 KLRK1 DDX12P ENSG00000213443 LOC255308 ENSG00000257027 ENSG00000256682 ENSG00000255958 GABARAPL1
GH12G010391 1.9 FANTOM5 Ensembl ENCODE dbSUPER 15.7 +31.0 31015 7.4 FOXA2 ARID4B FEZF1 CBX5 DEK JUNB TSHZ1 ZNF662 TBX21 KAT8 KLRK1 KLRC3 KLRC4 KLRC2 LOC101928100 KLRA1P KLRC1 KLRD1 KLRC4-KLRK1
GH12G010384 1.5 FANTOM5 ENCODE dbSUPER 14.9 +23.7 23670 5.1 TBP PKNOX1 FOXA2 ZSCAN4 FEZF1 BMI1 ZEB1 GTF3C2 CBX5 ETV6 KLRA1P TAS2R14 TAS2R15P MAGOHB TAS2R19 TAS2R43 KLRC3 TAS2R31 DDX12P LOC101928100
GH12G010408 1 ENCODE dbSUPER 14.8 +45.6 45623 1.1 CTCF TAL1 IRF3 FEZF1 RAD21 CHAMP1 FOXK2 ZBTB48 SMC3 TCF7L2 KLRC3 LOC101928100 KLRC2 KLRC4 KLRK1
GH12G010403 0.6 dbSUPER 13.3 +41.1 41099 2.2 ZNF280D SMAD5 MTA2 ZBED1 CBFB JUNB TBX21 CBX5 EED LOC101928100 KLRC2 KLRC1 KLRC3 KLRC4 KLRK1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101928100 on UCSC Golden Path with GeneCards custom track

Promoters for LOC101928100 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000048714 1031 1601 HDGF PKNOX1 ATF1 ARID4B FEZF1 GLIS2 ZNF143 ZNF263 REST TBX21

Genomic Location for LOC101928100 Gene

Chromosome:
12
Start:
10,363,769 bp from pter
End:
10,398,506 bp from pter
Size:
34,738 bases
Orientation:
Plus strand

Genomic View for LOC101928100 Gene

Genes around LOC101928100 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928100 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928100 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928100 Gene

Proteins for LOC101928100 Gene

Post-translational modifications for LOC101928100 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928100 Gene

Domains & Families for LOC101928100 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928100 Gene

Function for LOC101928100 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928100 Gene

Localization for LOC101928100 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC101928100 Gene

Pathways & Interactions for LOC101928100 Gene

SuperPathways for LOC101928100 Gene

No Data Available

Interacting Proteins for LOC101928100 Gene

Gene Ontology (GO) - Biological Process for LOC101928100 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928100 Gene

Drugs & Compounds for LOC101928100 Gene

No Compound Related Data Available

Transcripts for LOC101928100 Gene

mRNA/cDNA for LOC101928100 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928100 Gene

No ASD Table

Relevant External Links for LOC101928100 Gene

GeneLoc Exon Structure for
LOC101928100

Expression for LOC101928100 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928100 Gene

genes like me logo Genes that share expression patterns with LOC101928100: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928100 Gene

Orthologs for LOC101928100 Gene

Evolution for LOC101928100 Gene

ENSEMBL:
Gene Tree for LOC101928100 (if available)
TreeFam:
Gene Tree for LOC101928100 (if available)

No data available for Orthologs for LOC101928100 Gene

Paralogs for LOC101928100 Gene

No data available for Paralogs for LOC101928100 Gene

Variants for LOC101928100 Gene

Sequence variations from dbSNP and Humsavar for LOC101928100 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000052815 -- 10,363,878(+) AGGTC(C/T)CCGGG nc-transcript-variant
rs1000102272 -- 10,395,232(+) TACCA(C/T)GTAGT intron-variant
rs1000147161 -- 10,381,503(+) AGAAA(C/G)GAATC intron-variant
rs1000156924 -- 10,366,696(+) CTGTG(C/T)AAATG intron-variant
rs1000194817 -- 10,375,794(+) TACTC(C/T)AGCAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928100 Gene

Variant ID Type Subtype PubMed ID
dgv2358n54 CNV loss 21841781
esv3892136 CNV loss 25118596
nsv1036390 CNV loss 25217958
nsv1051292 CNV loss 25217958
nsv557455 CNV loss 21841781
nsv832328 CNV gain 17160897
nsv8914 CNV loss 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC101928100 Gene

Disorders for LOC101928100 Gene

Relevant External Links for LOC101928100

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101928100

No disorders were found for LOC101928100 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928100 Gene

Publications for LOC101928100 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for LOC101928100 Gene

Sources for LOC101928100 Gene

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