Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC101928012 Gene

Subcategory (RNA class) for LOC101928012 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101928012 Gene

  • Uncharacterized LOC101928012 3
  • AC002463.3 5

External Ids for LOC101928012 Gene

Previous GeneCards Identifiers for LOC101928012 Gene

  • GC07U903645

Summaries for LOC101928012 Gene

GeneCards Summary for LOC101928012 Gene

LOC101928012 (Uncharacterized LOC101928012) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101928012 Gene

Genomics for LOC101928012 Gene

Regulatory Elements for LOC101928012 Gene

Enhancers for LOC101928012 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G112571 1.3 Ensembl ENCODE 7.3 -49.7 -49677 2.6 HNRNPUL1 PKNOX1 FOXA2 CREB3L1 ARNT ARID4B FEZF1 YY1 ZNF766 FOS LOC101928012 GC07M112561 PIR40021
GH07G112646 0.6 ENCODE 11.5 +24.6 24565 0.7 POLR2A SMARCA4 RBBP5 PRDM10 GABPA SP7 LOC101928012 GC07P112648
GH07G112876 0.7 ENCODE 5.5 +254.6 254574 1.1 ELF3 CTCF PKNOX1 FOXA2 SAP130 FOXA3 MAFG FOXA1 RARA ZNF7 LOC101928012 BMT2 TMEM168
GH07G112580 0.7 ENCODE 4.3 -41.0 -41044 1.2 SCRT1 PKNOX1 NR2F1 MEF2D ZNF316 PBX2 SCRT2 HMBOX1 NR2F6 EMSY LOC101928012 GC07M112561 PIR40021
GH07G112667 0.5 ENCODE 4.9 +46.2 46205 2.8 MAFF ZNF316 MAFG EMSY MAFK LOC101928012 GC07M112672 GC07P112648
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101928012 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC101928012 Gene

Chromosome:
7
Start:
112,622,378 bp from pter
End:
112,708,080 bp from pter
Size:
85,703 bases
Orientation:
Plus strand

Genomic View for LOC101928012 Gene

Genes around LOC101928012 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928012 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928012 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928012 Gene

Proteins for LOC101928012 Gene

Post-translational modifications for LOC101928012 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928012 Gene

Domains & Families for LOC101928012 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101928012 Gene

Function for LOC101928012 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928012 Gene

Localization for LOC101928012 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC101928012 Gene

Pathways & Interactions for LOC101928012 Gene

SuperPathways for LOC101928012 Gene

No Data Available

Interacting Proteins for LOC101928012 Gene

Gene Ontology (GO) - Biological Process for LOC101928012 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928012 Gene

Transcripts for LOC101928012 Gene

mRNA/cDNA for LOC101928012 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928012 Gene

No ASD Table

Relevant External Links for LOC101928012 Gene

GeneLoc Exon Structure for
LOC101928012

Expression for LOC101928012 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928012 Gene

genes like me logo Genes that share expression patterns with LOC101928012: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928012 Gene

Orthologs for LOC101928012 Gene

Evolution for LOC101928012 Gene

ENSEMBL:
Gene Tree for LOC101928012 (if available)
TreeFam:
Gene Tree for LOC101928012 (if available)

No data available for Orthologs for LOC101928012 Gene

Paralogs for LOC101928012 Gene

No data available for Paralogs for LOC101928012 Gene

Variants for LOC101928012 Gene

Sequence variations from dbSNP and Humsavar for LOC101928012 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000028613 -- 112,668,526(+) GGCAA(A/G)TTTCT intron-variant
rs1000046206 -- 112,705,828(+) GAAAA(C/T)GCAAA intron-variant
rs1000073425 -- 112,673,618(+) TTTAA(A/T)TTCCT intron-variant
rs1000125910 -- 112,689,418(+) GTCAG(C/G)CCCCT intron-variant
rs1000187473 -- 112,648,584(+) TTCTG(A/C)CCAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101928012 Gene

Variant ID Type Subtype PubMed ID
esv2422365 CNV duplication 17116639
esv2667271 CNV deletion 23128226
esv3379066 CNV insertion 20981092
esv3614625 CNV loss 21293372
esv3614626 CNV loss 21293372
esv3614627 CNV loss 21293372
esv3891194 CNV gain 25118596
nsv464689 CNV gain 19166990
nsv507411 OTHER sequence alteration 20534489
nsv523811 CNV loss 19592680
nsv5904 CNV insertion 18451855
nsv608200 CNV gain 21841781
nsv608226 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC101928012 Gene

Disorders for LOC101928012 Gene

Relevant External Links for LOC101928012

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101928012

No disorders were found for LOC101928012 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101928012 Gene

Publications for LOC101928012 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC101928012 Gene

Sources for LOC101928012 Gene

Content
Loading form....