Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC101927979 Gene

Subcategory (RNA class) for LOC101927979 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927979 Gene

  • Translation Initiation Factor IF-2 3
  • RP5-1050D4.5 5

External Ids for LOC101927979 Gene

Previous GeneCards Identifiers for LOC101927979 Gene

  • GC17U901886

Summaries for LOC101927979 Gene

GeneCards Summary for LOC101927979 Gene

LOC101927979 (Translation Initiation Factor IF-2) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927979 Gene

Genomics for LOC101927979 Gene

Regulatory Elements for LOC101927979 Gene

Enhancers for LOC101927979 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G004502 1.4 Ensembl ENCODE dbSUPER 40.5 -483.0 -483040 4.5 HDGF PKNOX1 FOXA2 ZFP64 BMI1 TCF12 ZNF121 FOS EGR2 ZNF680 LOC101927979 ZNF594 ZNF232 LOC100130950 LOC105371492 INCA1 DHX33 MYBBP1A ENSG00000229782 GC17M004505
GH17G004407 0.8 ENCODE 49.4 -579.7 -579654 0.9 PKNOX1 FOXA2 ZFP64 ZNF354C FOS CREM ZNF202 ZNF680 ZNF426 REST LOC101927979 ZNF232 ZNF594 LOC100130950 LOC105371492 ENSG00000263220 INCA1 CYB5D2 SPNS3 GC17P004368
GH17G005437 1.1 ENCODE 34.3 +451.1 451064 2.9 CREB3L1 AGO1 WRNIP1 ARID4B SIN3A DMAP1 ZNF207 ZNF143 FOS SP3 LOC101927979 RPAIN ZNF232 DERL2 MIS12 ENSG00000263272 LOC100130950 NUP88 DHX33 SPAG7
GH17G004965 1.4 ENCODE dbSUPER 20.5 -19.1 -19066 5.4 CREB3L1 AGO1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 SPAG7 ZNF232 INCA1 CHRNE LOC100130950 LOC101927979 KIF1C DHX33 CAMTA2 RNF167
GH17G004262 1.1 ENCODE 26 -724.0 -723985 2.3 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 ZNF207 ZNF232 LOC101927979 LOC100130950 ZNF594 LOC105371492 ENSG00000263164 ENSG00000235085 CYB5D2 ANKFY1 RYKP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101927979 on UCSC Golden Path with GeneCards custom track

Promoters for LOC101927979 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000090570 -182 1801 HDGF HNRNPUL1 PKNOX1 MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B

Genomic Location for LOC101927979 Gene

Chromosome:
17
Start:
4,987,682 bp from pter
End:
4,988,778 bp from pter
Size:
1,097 bases
Orientation:
Plus strand

Genomic View for LOC101927979 Gene

Genes around LOC101927979 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927979 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927979 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927979 Gene

Proteins for LOC101927979 Gene

Post-translational modifications for LOC101927979 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927979 Gene

Domains & Families for LOC101927979 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927979 Gene

Function for LOC101927979 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927979 Gene

Localization for LOC101927979 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC101927979 Gene

Pathways & Interactions for LOC101927979 Gene

SuperPathways for LOC101927979 Gene

No Data Available

Interacting Proteins for LOC101927979 Gene

Gene Ontology (GO) - Biological Process for LOC101927979 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927979 Gene

Drugs & Compounds for LOC101927979 Gene

No Compound Related Data Available

Transcripts for LOC101927979 Gene

mRNA/cDNA for LOC101927979 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927979 Gene

No ASD Table

Relevant External Links for LOC101927979 Gene

GeneLoc Exon Structure for
LOC101927979

Expression for LOC101927979 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927979 Gene

genes like me logo Genes that share expression patterns with LOC101927979: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927979 Gene

Orthologs for LOC101927979 Gene

Evolution for LOC101927979 Gene

ENSEMBL:
Gene Tree for LOC101927979 (if available)
TreeFam:
Gene Tree for LOC101927979 (if available)

No data available for Orthologs for LOC101927979 Gene

Paralogs for LOC101927979 Gene

No data available for Paralogs for LOC101927979 Gene

Variants for LOC101927979 Gene

Sequence variations from dbSNP and Humsavar for LOC101927979 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000191463 -- 4,986,832(+) ATAGA(A/C)TCTGG intron-variant, upstream-variant-2KB
rs1000453724 -- 4,987,266(+) CAGGA(A/G)AACCT intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001194001 -- 4,988,534(+) AGGGG(G/T)CTCCA nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, missense
rs1001225120 -- 4,988,222(+) GTGAG(A/T)GCGGT nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime, utr-variant-5-prime
rs1002194829 -- 4,990,148(+) TCTAC(A/T)CACGT intron-variant, nc-transcript-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC101927979 Gene

Disorders for LOC101927979 Gene

Relevant External Links for LOC101927979

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101927979

No disorders were found for LOC101927979 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927979 Gene

Publications for LOC101927979 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for LOC101927979 Gene

Sources for LOC101927979 Gene

Content
Loading form....