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Aliases for LOC101927817 Gene

Subcategory (RNA class) for LOC101927817 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC101927817 Gene

  • Uncharacterized LOC101927817 3

External Ids for LOC101927817 Gene

Previous GeneCards Identifiers for LOC101927817 Gene

  • GC16U901583

Summaries for LOC101927817 Gene

GeneCards Summary for LOC101927817 Gene

LOC101927817 (Uncharacterized LOC101927817) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927817 Gene

Genomics for LOC101927817 Gene

Regulatory Elements for LOC101927817 Gene

Enhancers for LOC101927817 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G089430 1.3 Ensembl ENCODE dbSUPER 0.7 +0.6 596 2.1 PKNOX1 FOXA2 SIN3A RARA ZNF366 EGR1 HSF1 EGR2 PPARG PBX2 LOC101927817 RNU6-430P
GH16G089421 2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.9 -7904 2.4 HDGF FOXA2 PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 FEZF1 ZNF2 SNORD68 MC1R AFG3L1P ENSG00000260121 ENSG00000268218 ZNF778 SPG7 RPL13 ANKRD11 TCF25
GH16G089440 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.0 11965 5.8 HNRNPUL1 PKNOX1 FOXA2 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SPG7 ENSG00000268218 RPL13 AFG3L1P MC1R DBNDD1 ZNF778 SNORD68 ENSG00000260279 LOC101927863
GH16G089425 1 Ensembl dbSUPER 0.7 -4.9 -4918 0.4 HDAC1 ATF1 PKNOX1 ETV1 TAL1 RBBP5 EBF1 TCF12 POLR2A KDM5B LOC101927817 ENSG00000261692
GH16G089435 1.4 Ensembl ENCODE dbSUPER 0.4 +5.0 5049 1.7 HDAC1 HDGF PKNOX1 CREB3L1 ZFP64 SIN3A RAD21 RARA ZNF121 EGR1 SPG7 RNU6-430P LOC101927817
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101927817 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC101927817 Gene

Chromosome:
16
Start:
89,430,918 bp from pter
End:
89,454,494 bp from pter
Size:
23,577 bases
Orientation:
Plus strand

Genomic View for LOC101927817 Gene

Genes around LOC101927817 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927817 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927817 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927817 Gene

Proteins for LOC101927817 Gene

Post-translational modifications for LOC101927817 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927817 Gene

Domains & Families for LOC101927817 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927817 Gene

Function for LOC101927817 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927817 Gene

Localization for LOC101927817 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC101927817 Gene

Pathways & Interactions for LOC101927817 Gene

SuperPathways for LOC101927817 Gene

No Data Available

Interacting Proteins for LOC101927817 Gene

Gene Ontology (GO) - Biological Process for LOC101927817 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927817 Gene

Drugs & Compounds for LOC101927817 Gene

No Compound Related Data Available

Transcripts for LOC101927817 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927817 Gene

No ASD Table

Relevant External Links for LOC101927817 Gene

GeneLoc Exon Structure for
LOC101927817

No data available for mRNA/cDNA for LOC101927817 Gene

Expression for LOC101927817 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927817 Gene

Orthologs for LOC101927817 Gene

No data available for Orthologs and Evolution for LOC101927817 Gene

Paralogs for LOC101927817 Gene

No data available for Paralogs for LOC101927817 Gene

Variants for LOC101927817 Gene

Sequence variations from dbSNP and Humsavar for LOC101927817 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000061492 -- 89,443,762(+) GAATA(C/G)GGGTG intron-variant
rs1000134610 -- 89,443,606(+) ACGCA(C/T)GGAAA intron-variant
rs1000282116 -- 89,451,475(+) TGTGT(C/G)ATCTC intron-variant
rs1000323283 -- 89,432,405(+) CTCCC(A/G)GAGCC intron-variant, upstream-variant-2KB
rs1000399443 -- 89,453,107(+) GCACA(C/T)TTCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927817 Gene

Variant ID Type Subtype PubMed ID
dgv555e214 CNV loss 21293372
esv2758670 CNV gain 17122850
esv3639579 CNV gain 21293372
nsv1063483 CNV gain 25217958
nsv1109037 CNV deletion 24896259
nsv1138486 CNV deletion 24896259
nsv428331 CNV gain+loss 18775914
nsv471118 CNV gain 18288195
nsv482951 CNV loss 15286789
nsv512455 CNV loss 21212237
nsv573735 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC101927817 Gene

Disorders for LOC101927817 Gene

Relevant External Links for LOC101927817

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101927817

No disorders were found for LOC101927817 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927817 Gene

Publications for LOC101927817 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for LOC101927817 Gene

Sources for LOC101927817 Gene

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