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Aliases for LOC101927556 Gene

Subcategory (RNA class) for LOC101927556 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927556 Gene

  • Uncharacterized LOC101927556 3
  • RP11-459F6.3 5

External Ids for LOC101927556 Gene

Previous GeneCards Identifiers for LOC101927556 Gene

  • GC16U901537

Summaries for LOC101927556 Gene

GeneCards Summary for LOC101927556 Gene

LOC101927556 (Uncharacterized LOC101927556) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927556 Gene

Genomics for LOC101927556 Gene

Regulatory Elements for LOC101927556 Gene

Enhancers for LOC101927556 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G057626 1.6 Ensembl ENCODE dbSUPER 47.7 -500.7 -500696 4.8 HDGF PKNOX1 SIN3A ARID4B DMAP1 YBX1 ZNF2 ZNF766 ZNF302 ZNF416 RSPRY1 LOC101927556 POLR2C LOC105371286 NUP93 ADGRG3 CCDC102A SETD6 ARL2BP CNGB1
GH16G057589 1.5 Ensembl ENCODE dbSUPER 22.5 -537.4 -537424 4.1 HDGF PKNOX1 ZFP64 SIN3A ARID4B YBX1 ZNF2 ZNF143 FOS DEK RSPRY1 LOC101927556 POLR2C ADGRG3 CCDC102A GC16P057594 GC16P057566
GH16G057531 1.9 FANTOM5 Ensembl ENCODE dbSUPER 16.9 -593.7 -593667 8.1 HDGF PKNOX1 ZFP64 WRNIP1 ARID4B YBX1 ZNF143 ZNF207 FOS SP3 LOC105371286 RSPRY1 LOC101927556 CCDC102A POLR2C DOK4 ADGRG5 PIR39147
GH16G057281 1.6 Ensembl ENCODE dbSUPER 18.2 -846.0 -845969 3.3 HDGF HNRNPUL1 MLX CREB3L1 ZFP64 ARID4B SIN3A SLC30A9 ZNF143 FOS RSPRY1 PLLP LOC101927556 POLR2C CSNK2A2 FAM192A ENSG00000260038
GH16G057763 1.5 Ensembl ENCODE dbSUPER 13.2 -365.1 -365143 2.5 HDGF HNRNPUL1 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 YY1 KIFC3 RSPRY1 LOC101927556 SETD6 GC16P057760 GC16P057766
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101927556 on UCSC Golden Path with GeneCards custom track

Promoters for LOC101927556 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000086546 -280 2000 MLX CREB3L1 FEZF1 DMAP1 YY1 ZNF416 ZNF143 SP3 NFYC TBX21

Genomic Location for LOC101927556 Gene

Chromosome:
16
Start:
58,129,480 bp from pter
End:
58,163,295 bp from pter
Size:
33,816 bases
Orientation:
Plus strand

Genomic View for LOC101927556 Gene

Genes around LOC101927556 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927556 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927556 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927556 Gene

Proteins for LOC101927556 Gene

Post-translational modifications for LOC101927556 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927556 Gene

Domains & Families for LOC101927556 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927556 Gene

Function for LOC101927556 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927556 Gene

Localization for LOC101927556 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC101927556 Gene

Pathways & Interactions for LOC101927556 Gene

SuperPathways for LOC101927556 Gene

No Data Available

Interacting Proteins for LOC101927556 Gene

Gene Ontology (GO) - Biological Process for LOC101927556 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927556 Gene

Drugs & Compounds for LOC101927556 Gene

No Compound Related Data Available

Transcripts for LOC101927556 Gene

mRNA/cDNA for LOC101927556 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927556 Gene

No ASD Table

Relevant External Links for LOC101927556 Gene

GeneLoc Exon Structure for
LOC101927556

Expression for LOC101927556 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927556 Gene

genes like me logo Genes that share expression patterns with LOC101927556: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927556 Gene

Orthologs for LOC101927556 Gene

Evolution for LOC101927556 Gene

ENSEMBL:
Gene Tree for LOC101927556 (if available)
TreeFam:
Gene Tree for LOC101927556 (if available)

No data available for Orthologs for LOC101927556 Gene

Paralogs for LOC101927556 Gene

No data available for Paralogs for LOC101927556 Gene

Variants for LOC101927556 Gene

Sequence variations from dbSNP and Humsavar for LOC101927556 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000006637 -- 58,155,197(+) AGAGG(C/G)TGCAG intron-variant
rs1000058310 -- 58,145,582(+) AGTGG(C/T)GCGAT intron-variant
rs1000108614 -- 58,145,711(+) GAGAT(A/G)GGGTT intron-variant
rs1000136006 -- 58,158,106(+) CATAC(C/T)CTTCA intron-variant, utr-variant-3-prime
rs1000242697 -- 58,160,362(+) CACAG(C/T)AACAC intron-variant, nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC101927556 Gene

Disorders for LOC101927556 Gene

No disorders were found for LOC101927556 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927556 Gene

Publications for LOC101927556 Gene

No publications were found for LOC101927556 Gene.

Products for LOC101927556 Gene

Sources for LOC101927556 Gene

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