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Aliases for LOC101927550 Gene

Subcategory (RNA class) for LOC101927550 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927550 Gene

  • Uncharacterized LOC101927550 3
  • AC004893.2 5

External Ids for LOC101927550 Gene

Previous GeneCards Identifiers for LOC101927550 Gene

  • GC07U903679

Summaries for LOC101927550 Gene

GeneCards Summary for LOC101927550 Gene

LOC101927550 (Uncharacterized LOC101927550) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927550 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927550 Gene

Genomics for LOC101927550 Gene

Regulatory Elements for LOC101927550 Gene

Enhancers for LOC101927550 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H099579 1.4 FANTOM5 Ensembl ENCODE 75.3 +567.2 567236 1 ZNF2 ZBTB40 RAD21 ZNF366 ZNF354C ZNF202 ZNF680 ELF4 REST ZNF518A ZSCAN25 TRRAP TRIM4 LOC100131859 ZNF3 ZNF655 ENSG00000242798 STAG3L5P AP4M1 LOC101927550
GH07H099373 1.8 FANTOM5 ENCODE dbSUPER 40.3 +365.1 365144 8 HDGF PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF143 ZNF207 ZSCAN25 TRRAP LOC101927550 ZNF655 ZNF394 TRIM4 ENSG00000242798 AP4M1 PTCD1 ZNF3
GH07H098470 1.4 FANTOM5 Ensembl ENCODE 51.5 -542.5 -542454 1 KLF1 ATF1 ZFP64 MAX ZNF140 ZNF266 ZNF697 ZNF664 ZNF791 POLR2A TRRAP LOC101927550 LOC100131859 LOC100419643 RPS3AP26 PTCD1 SMURF1 NPTX2 BAIAP2L1 ENSG00000272950
GH07H099464 1.2 ENCODE 46.2 +452.6 452640 1 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZSCAN25 ZNF3 ZNF655 TRIM4 TRRAP LOC101927550 LOC100131859 ENSG00000242798 STAG3L5P SMURF1
GH07H099223 1.5 Ensembl ENCODE dbSUPER 35.7 +211.8 211780 1 PKNOX1 ATF1 ARNT YBX1 TCF12 GTF3C2 CBX5 ATF7 FOS TSHZ1 ZSCAN25 TRIM4 ZNF655 SMURF1 ZNF3 PTCD1 TRRAP LOC100419643 LOC101927550 ENSG00000242798
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101927550 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC101927550 Gene

Chromosome:
7
Start:
99,013,165 bp from pter
End:
99,048,240 bp from pter
Size:
35,076 bases
Orientation:
Plus strand

Genomic View for LOC101927550 Gene

Genes around LOC101927550 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927550 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927550 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927550 Gene

Proteins for LOC101927550 Gene

Post-translational modifications for LOC101927550 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927550 Gene

Domains & Families for LOC101927550 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927550 Gene

Function for LOC101927550 Gene

Phenotypes From GWAS Catalog for LOC101927550 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927550 Gene

Localization for LOC101927550 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927550 Gene

Pathways & Interactions for LOC101927550 Gene

SuperPathways for LOC101927550 Gene

No Data Available

Interacting Proteins for LOC101927550 Gene

Gene Ontology (GO) - Biological Process for LOC101927550 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927550 Gene

Drugs & Compounds for LOC101927550 Gene

No Compound Related Data Available

Transcripts for LOC101927550 Gene

mRNA/cDNA for LOC101927550 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927550 Gene

No ASD Table

Relevant External Links for LOC101927550 Gene

GeneLoc Exon Structure for
LOC101927550

Expression for LOC101927550 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927550 Gene

genes like me logo Genes that share expression patterns with LOC101927550: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927550 Gene

Orthologs for LOC101927550 Gene

Evolution for LOC101927550 Gene

ENSEMBL:
Gene Tree for LOC101927550 (if available)
TreeFam:
Gene Tree for LOC101927550 (if available)

No data available for Orthologs for LOC101927550 Gene

Paralogs for LOC101927550 Gene

No data available for Paralogs for LOC101927550 Gene

Variants for LOC101927550 Gene

Sequence variations from dbSNP and Humsavar for LOC101927550 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000080972 -- 99,024,878(+) ATGAA(A/G)TGGAT intron-variant
rs1000101366 -- 99,014,031(+) AGATC(A/G)CAGTT nc-transcript-variant
rs1000302667 -- 99,030,553(+) GGCCA(C/T)GAGCT intron-variant, utr-variant-3-prime
rs1000414818 -- 99,030,503(+) TCTGC(A/C)AGCTT intron-variant, utr-variant-3-prime
rs1000557558 -- 99,025,150(+) AGCCA(A/G)ACAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927550 Gene

Variant ID Type Subtype PubMed ID
esv3614265 CNV loss 21293372
esv3614266 CNV loss 21293372
esv3614267 CNV gain 21293372
nsv819767 CNV gain 19587683

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC101927550 Gene

Disorders for LOC101927550 Gene

Relevant External Links for LOC101927550

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101927550

No disorders were found for LOC101927550 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927550 Gene

Publications for LOC101927550 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for LOC101927550 Gene

Sources for LOC101927550 Gene

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