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Aliases for LOC101927497 Gene

Subcategory (RNA class) for LOC101927497 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927497 Gene

  • Uncharacterized LOC101927497 3
  • AC002454.1 5

External Ids for LOC101927497 Gene

Previous GeneCards Identifiers for LOC101927497 Gene

  • GC07U903512

Summaries for LOC101927497 Gene

GeneCards Summary for LOC101927497 Gene

LOC101927497 (Uncharacterized LOC101927497) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927497 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927497 Gene

Genomics for LOC101927497 Gene

Regulatory Elements for LOC101927497 Gene

Enhancers for LOC101927497 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H092630 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.8 -202.8 -202801 5.6 PKNOX1 FOXA2 ARID4B SIN3A YY1 TCF12 SLC30A9 FOS ATF7 RUNX3 CDK6 KRIT1 LOC101927497 PEX1 ENSG00000243107 FAM133B GATAD1 AKAP9 SAMD9 GC07M092611
GH07H092807 2 FANTOM5 Ensembl ENCODE dbSUPER 11.9 -27.0 -27043 4.1 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 ZNF766 CBX5 FOS CDK6 LOC101927497 CYP51A1 SAMD9 RBM48 FAM133B PEX1 GC07M092702 RNU6-10P
GH07H092638 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12 -193.0 -193010 10.3 HDGF PKNOX1 TBL1XR1 KLF17 SIN3A BMI1 BATF ZNF143 FOS ATF7 CDK6 LOC101927497 FAM133B GATAD1 KRIT1 ANKIB1 SAMD9 GC07M092611 RNU6-10P GC07M092702
GH07H092620 1.4 Ensembl ENCODE dbSUPER 12.7 -214.2 -214235 3.3 PKNOX1 ATF1 RB1 BATF RAD21 RFX5 YY1 ZNF143 ZNF207 RCOR1 CDK6 LOC101927497 FAM133B GATAD1 GC07M092611 RNU6-10P GC07M092702
GH07H092716 1.3 Ensembl ENCODE dbSUPER 12.5 -117.2 -117206 5.3 CTCF IRF2 JUN YY1 POLR2A EED ETV6 RUNX3 IKZF2 HOMEZ CDK6 LOC101927497 GC07M092702 RNU6-10P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101927497 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927497 Gene

Genomic Locations for LOC101927497 Gene
chr7:92,836,483-92,917,187
(GRCh38/hg38)
Size:
80,705 bases
Orientation:
Plus strand
chr7:92,465,797-92,546,501
(GRCh37/hg19)

Genomic View for LOC101927497 Gene

Genes around LOC101927497 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927497 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927497 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927497 Gene

Proteins for LOC101927497 Gene

Post-translational modifications for LOC101927497 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927497 Gene

Domains & Families for LOC101927497 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927497 Gene

Function for LOC101927497 Gene

Phenotypes From GWAS Catalog for LOC101927497 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927497 Gene

Localization for LOC101927497 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927497 Gene

Pathways & Interactions for LOC101927497 Gene

SuperPathways for LOC101927497 Gene

No Data Available

Interacting Proteins for LOC101927497 Gene

Gene Ontology (GO) - Biological Process for LOC101927497 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927497 Gene

Drugs & Compounds for LOC101927497 Gene

No Compound Related Data Available

Transcripts for LOC101927497 Gene

mRNA/cDNA for LOC101927497 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927497 Gene

No ASD Table

Relevant External Links for LOC101927497 Gene

GeneLoc Exon Structure for
LOC101927497

Expression for LOC101927497 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927497 Gene

genes like me logo Genes that share expression patterns with LOC101927497: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927497 Gene

Orthologs for LOC101927497 Gene

Evolution for LOC101927497 Gene

ENSEMBL:
Gene Tree for LOC101927497 (if available)
TreeFam:
Gene Tree for LOC101927497 (if available)

No data available for Orthologs for LOC101927497 Gene

Paralogs for LOC101927497 Gene

No data available for Paralogs for LOC101927497 Gene

Variants for LOC101927497 Gene

Sequence variations from dbSNP and Humsavar for LOC101927497 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000066210 -- 92,907,670(+) GACAA(A/G)GTTTA intron-variant
rs1000103851 -- 92,861,777(+) AGTAC(C/G)TACAG intron-variant
rs1000111600 -- 92,876,464(+) AAAAA(A/C)CAAAT intron-variant
rs1000116773 -- 92,907,370(+) TATAC(A/C)TATGT intron-variant
rs1000278992 -- 92,883,436(+) AAATG(-/A)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927497 Gene

Variant ID Type Subtype PubMed ID
nsv5843 CNV deletion 18451855
nsv478700 CNV novel sequence insertion 20440878
nsv437991 CNV loss 16468122
nsv437022 CNV loss 16327808
nsv365451 CNV deletion 16902084
nsv1133666 CNV deletion 24896259
nsv1125428 OTHER inversion 24896259
nsv1074529 CNV deletion 25765185
nsv1025387 CNV loss 25217958
esv3614154 CNV loss 21293372
esv3614151 CNV loss 21293372
esv3614150 CNV loss 21293372
esv3571990 CNV loss 25503493
esv3439597 CNV insertion 20981092
esv3305327 CNV mobile element insertion 20981092
esv2752192 CNV gain 17911159
esv2669511 CNV deletion 23128226

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC101927497 Gene

Disorders for LOC101927497 Gene

Relevant External Links for LOC101927497

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC101927497

No disorders were found for LOC101927497 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927497 Gene

Publications for LOC101927497 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 60
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 60
  3. Functional role of lncRNA LOC101927497 in N-methyl-N'-nitro-N-nitrosoguanidine-induced malignantly transformed human gastric epithelial cells. (PMID: 29223541) Luo Y … Zhou X (Life sciences 2017) 3

Products for LOC101927497 Gene

Sources for LOC101927497 Gene

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