Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC101927300 Gene

Subcategory (RNA class) for LOC101927300 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927300 Gene

  • Uncharacterized LOC101927300 3
  • RP11-441O15.3 5

External Ids for LOC101927300 Gene

Previous GeneCards Identifiers for LOC101927300 Gene

  • GC10U901773

Summaries for LOC101927300 Gene

GeneCards Summary for LOC101927300 Gene

LOC101927300 (Uncharacterized LOC101927300) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927300 Gene

Genomics for LOC101927300 Gene

Regulatory Elements for LOC101927300 Gene

Enhancers for LOC101927300 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G099394 1.2 Ensembl ENCODE 19.6 -35.2 -35243 2.7 FOXA2 ATF1 ARID4B SIN3A FEZF1 ZNF48 ZNF121 GATA2 FOS PAF1 LOC101927300 GOT1 CNNM1 NKX2-3 PIR44588
GH10G099391 1 Ensembl ENCODE 18.5 -38.5 -38467 2.2 CTCF ESRRA SAP130 TEAD4 ZNF2 RAD21 TEAD3 GATA3 GATA2 SCRT2 LOC101927300 GOT1 CNNM1 NKX2-3 PIR44588
GH10G100178 1.7 FANTOM5 ENCODE dbSUPER 9.8 +752.0 751981 8.7 PKNOX1 FOXA2 CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 BLOC1S2 CWF19L1 ENSG00000273030 ENSG00000272572 ERLIN1 LOC101927300 CHUK DNMBP SPCS2P2
GH10G099550 1.2 ENCODE dbSUPER 10.7 +120.3 120340 1.4 PKNOX1 INSM2 FEZF1 ZNF2 ZNF366 ZSCAN5C SCRT2 ZNF391 EGR2 ZNF263 GOT1 LOC101927300 CUTC NKX2-3 GC10P099610
GH10G099707 1.2 ENCODE dbSUPER 10 +278.0 277994 3.0 PKNOX1 FOXA2 FEZF1 ZNF2 ZNF143 ZHX2 JUNB REST TSHZ1 ZNF592 ENTPD7 GOT1 LOC101927300 NKX2-3 BLOC1S2 PIR43293 PIR46433
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC101927300 on UCSC Golden Path with GeneCards custom track

Promoters for LOC101927300 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000032385 -291 2201 PKNOX1 FOXA2 ARID4B SIN3A DMAP1 YY1 SLC30A9 FOS DEK ZNF263

Genomic Location for LOC101927300 Gene

Chromosome:
10
Start:
99,431,191 bp from pter
End:
99,461,216 bp from pter
Size:
30,026 bases
Orientation:
Plus strand

Genomic View for LOC101927300 Gene

Genes around LOC101927300 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927300 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927300 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927300 Gene

Proteins for LOC101927300 Gene

Post-translational modifications for LOC101927300 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927300 Gene

Domains & Families for LOC101927300 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927300 Gene

Function for LOC101927300 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927300 Gene

Localization for LOC101927300 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC101927300 Gene

Pathways & Interactions for LOC101927300 Gene

SuperPathways for LOC101927300 Gene

No Data Available

Interacting Proteins for LOC101927300 Gene

Gene Ontology (GO) - Biological Process for LOC101927300 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927300 Gene

Drugs & Compounds for LOC101927300 Gene

No Compound Related Data Available

Transcripts for LOC101927300 Gene

mRNA/cDNA for LOC101927300 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927300 Gene

No ASD Table

Relevant External Links for LOC101927300 Gene

GeneLoc Exon Structure for
LOC101927300

Expression for LOC101927300 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927300 Gene

genes like me logo Genes that share expression patterns with LOC101927300: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927300 Gene

Orthologs for LOC101927300 Gene

Evolution for LOC101927300 Gene

ENSEMBL:
Gene Tree for LOC101927300 (if available)
TreeFam:
Gene Tree for LOC101927300 (if available)

No data available for Orthologs for LOC101927300 Gene

Paralogs for LOC101927300 Gene

No data available for Paralogs for LOC101927300 Gene

Variants for LOC101927300 Gene

Sequence variations from dbSNP and Humsavar for LOC101927300 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000322922 -- 99,430,496(+) GAAGT(A/C)GGCAG upstream-variant-2KB, reference, missense
rs1000388593 -- 99,437,501(+) ATTGT(A/G)GTAAA nc-transcript-variant
rs1000465667 -- 99,437,157(+) ACCTC(A/C)TAGAT nc-transcript-variant
rs1000671528 -- 99,435,822(+) AGACA(C/T)TCCAA nc-transcript-variant
rs1000819937 -- 99,437,211(+) GAAAG(C/T)CATTT nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC101927300 Gene

Disorders for LOC101927300 Gene

No disorders were found for LOC101927300 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927300 Gene

Publications for LOC101927300 Gene

No publications were found for LOC101927300 Gene.

Products for LOC101927300 Gene

Sources for LOC101927300 Gene

Content
Loading form....